Detailed information of evm.model.Ap2.372 in Astrangia poculata

Genomic Location: Ap2:3610306...3623518
NR annotation: CAH3173971.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002384 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF00353
all species →		HemolysinCabindRTX calcium-binding nonapeptide repeat (4 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018511
all species →		Conserved_siteHemolysin-type calcium-binding conserved siteInterproscan
IPR011049
all species →		Homologous_superfamilySerralysin-like metalloprotease, C-terminalInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR001190
all species →		DomainSRCR domainInterproscan
IPR001343
all species →		RepeatRTX calcium-binding nonapeptide repeatInterproscan
IPR050557
all species →		FamilyRTX toxin and mannuronan C5-epimeraseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38340
all species →		S-LAYER PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.372.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap2.372 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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