Gene detail

Detailed information of evm.model.Ap2.3726 in Astrangia poculata

Genomic Location: Ap2:38174430...38192907
NR annotation: XP_020615509.1, uncharacterized protein LOC110053599, partial [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3726

atggaagagcctgtgttatgcaaagtcaagggtttgtttgattatcatgctttgaagtcagatgaagttagttttgaagtggatgagattcttgatataattagtatacaaagcacagcatggtggactgcaagaaaccaagatggctctgttggccttattccgactaattatgtgcaggtagtgggagatgatgtgtcacatgtacctttccatgaaaacatgccagaagttggaaaccgtgcatcatctaaccagaaaaaccaaaaagacgatggagcagtgataccaggaaatgaatgcgatactgtgattgctaaattcaacttcaggcgaagatatggggatgaacttactattcagaagggtgaccgcatagatgtaattagaaaggccaaggatgggtggtggaaaggaaagattggaaaaaggattggatggtttccatcaaactatgtaacaaaggactgggataacggttatgaatgtggacctgatgcttctgtcatacacaaagtcaagtgcaagttcaccttttatgctgataaacctgaggaacttagttgtgaagtgggagacattctggatgttatttataagcctgaagatgatcctgaatggtggcttgtgaaaaaccaagatggtttaatagggcttgttcctataaaccatgtgacggtagttatagacactgaaaatgagcctgcaaatggaaacaagtcaacatcagtgaattcagccaaggaagagtcaagtgaaaaatctaagaaaggtttcttctcttctgcaagacacatatttaaaaaacttgggcggaaaaagtctatataccgtgtacagcctaaatcgacagtgtcatcatcatcgtcatcatccgtaacaaaccatgttacacaagaaaccaagcaatccacagtgcctccagagattcttgcacgagggcccttggccttgagagcataccacaatgctcttagtgagggaagaacatctgtgaagagggtgccagtcatgatgattggacaagatcggtcaggaaaaaccagtttaaagaagtcattgaaggggcaggtatttaacccaaatgaagacaccactgtagggatagatgtggatccttcacatttcaaagtgtcaactgaggtttggaagacagggcagaaggatcaaggatcaactgttaatgcagccttttcttatgagcaccaagcagcacagctgattgtagatagcttgatgacggaaaaacaaagaccagaagaaactacagcttcagttgcagcgcagtctgaaagtattcctttcgttagtgcagattcatcacctccgagacccaaagaaggagatttgaaacccttaccttcgaaagattcagagacaacacgtgaacctggagaggatgtggccaattctaatgaatgggatcaacaaggcacgtcaaacgtaccagacgaggtcgcgactctggttgaaaaattgcttcacgaggacaagaaagaagaagaagacaagaaagacatctattctgtgttatgggattttggtggacagtcagtctactatgtcacccacccgctctttcttacatcgagggcaatttatttgcttgcttatgacctcaaccgaaatccacatgagaaagccgatcctcttgcaaagcaaggaatgttcagagcatttgaagacaactgcagtctaaaaacgaatctagactacctagatttttggatgacatccgttgcttccctagccagtcctgactgcaaccatcaagtgtgctctaattcaatgctgttgccagagaaacttcctcctgtgttcttagtgtgcactcatgctgatgaacctcatggtggtggtgatccttgtgcactagccaatgaaatctttgattttttacaaaacaagccgtacagtgcccatttgttcgagcatgtctttgttgtggataatactaaatctggcggaaaatctgagtgtccagaagtactacgtttgcggcaggaaatacttgcagttgccaaggaactgccgcagatggaagaagctattccgatcaaatggctgcaatatgagaaagaacttcaagtcatgaaggaagacggattccactggatttctcttgaacgagcaaaacagattgcttctgaagtatgcaagattggtgaagatcaagaaattgtgacgttgctgaactttttacatgaccagagaattttgattcattttgatgacactcctgagttgaatagattggtggtcttggaccctcagtggatgattgatgtgttcaagaaagtgataactgtcaagcgttatgatcacgaagaaagagaatttagagaactatggcgcaaactagagaaaacaggaatcctgcaggaagaacttttaacacatgtctggagtcctctgttggaccatcaaggaacatctgaaagccttattgcaatcatggagaaattcagcctgatgtgtccgtggccttcatcagatgcttcatgtggcaaacagtacctggtgccatccatgctgatgtcgcacccaccacagagcatcgtgaaacttttagaagctgcatcaattccctctctttttcttaaatttgaatctcatcaaattcctcccagcttgtttccccgactggtgctgcagttttttcagtggtgcactgaagaatttccaagccctgtagacccccagttgttccacaattttgccaggttttacatctctccagatgaaggttgttcagttgtccttctgagccatcctgctgtggtcgaggttgttattctcagtgaaagtcacatagctgatcgagatgaaagctcacagtcgatgctgagcttctcgctgaccaaagccaatgcaatttaa

Transcript

evm.model.Ap2.3726

ATGGAAGAGCCTGTGTTATGCAAAGTCAAGGGTTTGTTTGATTATCATGCTTTGAAGTCAGATGAAGTTAGTTTTGAAGTGGATGAGATTCTTGATATAATTAGTATACAAAGCACAGCATGGTGGACTGCAAGAAACCAAGATGGCTCTGTTGGCCTTATTCCGACTAATTATGTGCAGGTAGTGGGAGATGATGTGTCACATGTACCTTTCCATGAAAACATGCCAGAAGTTGGAAACCGTGCATCATCTAACCAGAAAAACCAAAAAGACGATGGAGCAGTGATACCAGGAAATGAATGCGATACTGTGATTGCTAAATTCAACTTCAGGCGAAGATATGGGGATGAACTTACTATTCAGAAGGGTGACCGCATAGATGTAATTAGAAAGGCCAAGGATGGGTGGTGGAAAGGAAAGATTGGAAAAAGGATTGGATGGTTTCCATCAAACTATGTAACAAAGGACTGGGATAACGGTTATGAATGTGGACCTGATGCTTCTGTCATACACAAAGTCAAGTGCAAGTTCACCTTTTATGCTGATAAACCTGAGGAACTTAGTTGTGAAGTGGGAGACATTCTGGATGTTATTTATAAGCCTGAAGATGATCCTGAATGGTGGCTTGTGAAAAACCAAGATGGTTTAATAGGGCTTGTTCCTATAAACCATGTGACGGTAGTTATAGACACTGAAAATGAGCCTGCAAATGGAAACAAGTCAACATCAGTGAATTCAGCCAAGGAAGAGTCAAGTGAAAAATCTAAGAAAGGTTTCTTCTCTTCTGCAAGACACATATTTAAAAAACTTGGGCGGAAAAAGTCTATATACCGTGTACAGCCTAAATCGACAGTGTCATCATCATCGTCATCATCCGTAACAAACCATGTTACACAAGAAACCAAGCAATCCACAGTGCCTCCAGAGATTCTTGCACGAGGGCCCTTGGCCTTGAGAGCATACCACAATGCTCTTAGTGAGGGAAGAACATCTGTGAAGAGGGTGCCAGTCATGATGATTGGACAAGATCGGTCAGGAAAAACCAGTTTAAAGAAGTCATTGAAGGGGCAGGTATTTAACCCAAATGAAGACACCACTGTAGGGATAGATGTGGATCCTTCACATTTCAAAGTGTCAACTGAGGTTTGGAAGACAGGGCAGAAGGATCAAGGATCAACTGTTAATGCAGCCTTTTCTTATGAGCACCAAGCAGCACAGCTGATTGTAGATAGCTTGATGACGGAAAAACAAAGACCAGAAGAAACTACAGCTTCAGTTGCAGCGCAGTCTGAAAGTATTCCTTTCGTTAGTGCAGATTCATCACCTCCGAGACCCAAAGAAGGAGATTTGAAACCCTTACCTTCGAAAGATTCAGAGACAACACGTGAACCTGGAGAGGATGTGGCCAATTCTAATGAATGGGATCAACAAGGCACGTCAAACGTACCAGACGAGGTCGCGACTCTGGTTGAAAAATTGCTTCACGAGGACAAGAAAGAAGAAGAAGACAAGAAAGACATCTATTCTGTGTTATGGGATTTTGGTGGACAGTCAGTCTACTATGTCACCCACCCGCTCTTTCTTACATCGAGGGCAATTTATTTGCTTGCTTATGACCTCAACCGAAATCCACATGAGAAAGCCGATCCTCTTGCAAAGCAAGGAATGTTCAGAGCATTTGAAGACAACTGCAGTCTAAAAACGAATCTAGACTACCTAGATTTTTGGATGACATCCGTTGCTTCCCTAGCCAGTCCTGACTGCAACCATCAAGTGTGCTCTAATTCAATGCTGTTGCCAGAGAAACTTCCTCCTGTGTTCTTAGTGTGCACTCATGCTGATGAACCTCATGGTGGTGGTGATCCTTGTGCACTAGCCAATGAAATCTTTGATTTTTTACAAAACAAGCCGTACAGTGCCCATTTGTTCGAGCATGTCTTTGTTGTGGATAATACTAAATCTGGCGGAAAATCTGAGTGTCCAGAAGTACTACGTTTGCGGCAGGAAATACTTGCAGTTGCCAAGGAACTGCCGCAGATGGAAGAAGCTATTCCGATCAAATGGCTGCAATATGAGAAAGAACTTCAAGTCATGAAGGAAGACGGATTCCACTGGATTTCTCTTGAACGAGCAAAACAGATTGCTTCTGAAGTATGCAAGATTGGTGAAGATCAAGAAATTGTGACGTTGCTGAACTTTTTACATGACCAGAGAATTTTGATTCATTTTGATGACACTCCTGAGTTGAATAGATTGGTGGTCTTGGACCCTCAGTGGATGATTGATGTGTTCAAGAAAGTGATAACTGTCAAGCGTTATGATCACGAAGAAAGAGAATTTAGAGAACTATGGCGCAAACTAGAGAAAACAGGAATCCTGCAGGAAGAACTTTTAACACATGTCTGGAGTCCTCTGTTGGACCATCAAGGAACATCTGAAAGCCTTATTGCAATCATGGAGAAATTCAGCCTGATGTGTCCGTGGCCTTCATCAGATGCTTCATGTGGCAAACAGTACCTGGTGCCATCCATGCTGATGTCGCACCCACCACAGAGCATCGTGAAACTTTTAGAAGCTGCATCAATTCCCTCTCTTTTTCTTAAATTTGAATCTCATCAAATTCCTCCCAGCTTGTTTCCCCGACTGGTGCTGCAGTTTTTTCAGTGGTGCACTGAAGAATTTCCAAGCCCTGTAGACCCCCAGTTGTTCCACAATTTTGCCAGGTTTTACATCTCTCCAGATGAAGGTTGTTCAGTTGTCCTTCTGAGCCATCCTGCTGTGGTCGAGGTTGTTATTCTCAGTGAAAGTCACATAGCTGATCGAGATGAAAGCTCACAGTCGATGCTGAGCTTCTCGCTGACCAAAGCCAATGCAATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99M51	SH2/SH3 adapter protein Nck1 OS=Mus musculus OX=10090 GN=Nck1 PE=1 SV=1
P16333	SH2/SH3 adapter protein NCK1 OS=Homo sapiens OX=9606 GN=NCK1 PE=1 SV=1
O55033	Cytoplasmic protein NCK2 OS=Mus musculus OX=10090 GN=Nck2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15735 all species →	FCH AND DOUBLE SH3 DOMAINS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030833 all species →	Biological Process	regulation of actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3726.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.