Genomic Location: Ap2:38948876...38953324
NR annotation: XP_020608498.1, chondroitin sulfate N-acetylgalactosaminyltransferase 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.3790 |
| Transcript |
| evm.model.Ap2.3790 |
| Protein |
| evm.model.Ap2.3790 |
| UniProt accession | Description |
|---|---|
| Q8N6G5 | Chondroitin sulfate N-acetylgalactosaminyltransferase 2 OS=Homo sapiens OX=9606 GN=CSGALNACT2 PE=1 SV=1 |
| Q8TDX6 | Chondroitin sulfate N-acetylgalactosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=CSGALNACT1 PE=1 SV=2 |
| Q8C1F4 | Chondroitin sulfate N-acetylgalactosaminyltransferase 2 OS=Mus musculus OX=10090 GN=Csgalnact2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000773 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05679 all species → | CHGN | Chondroitin N-acetylgalactosaminyltransferase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051227 all species → | Family | Chondroitin sulfate glycosyltransferase | Interproscan |
| IPR029044 all species → | Homologous_superfamily | Nucleotide-diphospho-sugar transferases | Interproscan |
| IPR008428 all species → | Family | Chondroitin N-acetylgalactosaminyltransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12369 all species → | CHONDROITIN SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008376 all species → | Molecular Function | acetylgalactosaminyltransferase activity | Interproscan |
| GO:0030206 all species → | Biological Process | chondroitin sulfate biosynthetic process | Interproscan |
| GO:0047238 all species → | Molecular Function | glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity | Interproscan |
| GO:0032580 all species → | Cellular Component | Golgi cisterna membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00746 | CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2 | EC:2.4.1.174 EC:2.4.1.175 | Glycosyltransferases | ko01003 | deepkoala |
Transcript abundance of evm.model.Ap2.3790 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
