Gene detail

Detailed information of evm.model.Ap2.3820 in Astrangia poculata

Genomic Location: Ap2:39224168...39244583
NR annotation: XP_020615500.1, tyrosine-protein phosphatase non-receptor type 13-like isoform X3 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3820

atgtcgtcatctcaggaaaaagtatctcaactggaaaccaaacatcctatcatcgcgggaagacgggcagacgacaaggccgaggaggcaggcgttttgataggcgagggtgacaagttgatcaacgtggttttgctaaatggggaaaggcttaatgttagagttcagggttctgccactggacaggacttgtacagcatcatcactgatcatcttggacttacagagactatcttttttggtcttatgattatcaaagatggcgaacatgagttcttggacttgaatgagaaactttccaaactagcaaaatttgcgccccatctgtggaaagatgacgtttcttgcaattcgtctctggtttttacgatcttcttcagagtcaagtattacgtggagaatatctgtctgttacaacaacaatctactcggcacttgtactatctgcagttaagaaaggatgtgttggaaggagggatctacgttcatgaggagacctccatgctcttagcttcctacgccctgcaagctgaagtaggagattacaaccagactctgcatgggtcggactactttgttccagagcactatcttccgcagagggcgatcgccaaactcactgcttcctacataaagaaacatcttccgtcaatgcacaagactcacactggtctcagtgatgctcaggccgagattgagtacttgaaggaggctcagaaacttcaggaatatggaattatatttaacaaagtttctaaatataagaaggacaagagagggggttttagtttagggataagtgtaagaggactcattgtttatgaggaaagaggaatcgtgaagagtccaacgtttcgtcatccgtggcaaaacataaaaagaatggcctttcatcggagacggttttttattgaagcacacggtgatccagagacatccaagatggttctgtatacatgcagctataagaagtcgaggtatttgcttaaaatgtgtacatcgttctacaagttccaaatgatgatgggaatgaaattgtccagcctcaaggaatatccaaaagatggagtggtgaggatgaatggagtagtgaaaacagatgaatccgattctctggccggagacatgccagaattagcagcaggtaaacctgggcacgactcatcggtcatacagccatctggaataggtcccgcgattcatttgaatgggtcagcgtgcccagtacaagaagatcaaccagtacaggtcagtgttcatcctgtccagctgcagaaagtcaatggaagtctgggtcttaatatcattggtggcattgagttgggtggtatctacgtgaagacgatggcccctgaaggaccagcatctctcagcggaaaaatcaatattggcgacagaatcctcgaaattaacggtcacagtctagaaggtttatcgagacaagaggctgtaaacattttaaggacagcgcctcatgtttgcacaatgctgatcgagagctgtgtagccgctcctgccaccccaaacggaaagccagtaatgcctgggtccgagtccgcgtcagccttttatcacccaaatagacagcaacagatgcagcccatgatgcaacgccatccatcattggaatcgcagtactcctcaatgcagcagcagtttgtgccaagtcaaagtcaccagatcgaagacatagttgcagattacattcccattgaaattccaaaactcaatggaagtttcggtcttaatgttacgggtgggccagaactcgatggaatttatgtcaagtccctgctccctggtggagcggcagaggcatcgggaaaaatacgaaatggtgacagaatagtggagatcaatggagtagcaatggaaggactcaatcgcaaacaggcagtggagttgttaagacgctctgcggctactgcaacacttgtgattgagcgctacagacaaccagaacctgaaggtcctcatctggaagatttggaggatcttcttagaacatcgccaaattgtatcctcgtggagctacagaaaatgaaccattcatttggttttagtgttgtgggagggccagatttcggtggaattttcgtaaaaactatcaatccaaatggcgcagcggcgatggacggcagaataggaataaacgacagaatagtggctgtaaactgcgtgaaccttacaagagcgacgagacaagaggcggttgacgctcttcgaaactctccaatcattgctcagctagttgtagagaaaggtacagctgaagacctcatgacaaacagtagtgggccccccacccctcaggagtcaagatatggagcagtgcagtacagtcattaccatgctaactcggacagttataatgactacagcatggacgatctaccgtttgaagtctatcttaccaaaggccaaagtggactgggtatgagtctcacgggaggagataacggagctccgatctacattaagaaactggtgcctggaggctcagctctcttgtcagggcagctccaagtcaatgacatcattcttcaagtgaacaacaagaatttggatcgaatgacctacagagaagcgctttctatccttcgcaactgcccttcagaagttcgactacttgtacaaagaccccggatgtcatcgcatcccccttacccaggataccgcgggggcagcgacagagccagtgttgatagttacggaagctatagcagcatgtcaagtattttttaa

Transcript

evm.model.Ap2.3820

ATGTCGTCATCTCAGGAAAAAGTATCTCAACTGGAAACCAAACATCCTATCATCGCGGGAAGACGGGCAGACGACAAGGCCGAGGAGGCAGGCGTTTTGATAGGCGAGGGTGACAAGTTGATCAACGTGGTTTTGCTAAATGGGGAAAGGCTTAATGTTAGAGTTCAGGGTTCTGCCACTGGACAGGACTTGTACAGCATCATCACTGATCATCTTGGACTTACAGAGACTATCTTTTTTGGTCTTATGATTATCAAAGATGGCGAACATGAGTTCTTGGACTTGAATGAGAAACTTTCCAAACTAGCAAAATTTGCGCCCCATCTGTGGAAAGATGACGTTTCTTGCAATTCGTCTCTGGTTTTTACGATCTTCTTCAGAGTCAAGTATTACGTGGAGAATATCTGTCTGTTACAACAACAATCTACTCGGCACTTGTACTATCTGCAGTTAAGAAAGGATGTGTTGGAAGGAGGGATCTACGTTCATGAGGAGACCTCCATGCTCTTAGCTTCCTACGCCCTGCAAGCTGAAGTAGGAGATTACAACCAGACTCTGCATGGGTCGGACTACTTTGTTCCAGAGCACTATCTTCCGCAGAGGGCGATCGCCAAACTCACTGCTTCCTACATAAAGAAACATCTTCCGTCAATGCACAAGACTCACACTGGTCTCAGTGATGCTCAGGCCGAGATTGAGTACTTGAAGGAGGCTCAGAAACTTCAGGAATATGGAATTATATTTAACAAAGTTTCTAAATATAAGAAGGACAAGAGAGGGGGTTTTAGTTTAGGGATAAGTGTAAGAGGACTCATTGTTTATGAGGAAAGAGGAATCGTGAAGAGTCCAACGTTTCGTCATCCGTGGCAAAACATAAAAAGAATGGCCTTTCATCGGAGACGGTTTTTTATTGAAGCACACGGTGATCCAGAGACATCCAAGATGGTTCTGTATACATGCAGCTATAAGAAGTCGAGGTATTTGCTTAAAATGTGTACATCGTTCTACAAGTTCCAAATGATGATGGGAATGAAATTGTCCAGCCTCAAGGAATATCCAAAAGATGGAGTGGTGAGGATGAATGGAGTAGTGAAAACAGATGAATCCGATTCTCTGGCCGGAGACATGCCAGAATTAGCAGCAGGTAAACCTGGGCACGACTCATCGGTCATACAGCCATCTGGAATAGGTCCCGCGATTCATTTGAATGGGTCAGCGTGCCCAGTACAAGAAGATCAACCAGTACAGGTCAGTGTTCATCCTGTCCAGCTGCAGAAAGTCAATGGAAGTCTGGGTCTTAATATCATTGGTGGCATTGAGTTGGGTGGTATCTACGTGAAGACGATGGCCCCTGAAGGACCAGCATCTCTCAGCGGAAAAATCAATATTGGCGACAGAATCCTCGAAATTAACGGTCACAGTCTAGAAGGTTTATCGAGACAAGAGGCTGTAAACATTTTAAGGACAGCGCCTCATGTTTGCACAATGCTGATCGAGAGCTGTGTAGCCGCTCCTGCCACCCCAAACGGAAAGCCAGTAATGCCTGGGTCCGAGTCCGCGTCAGCCTTTTATCACCCAAATAGACAGCAACAGATGCAGCCCATGATGCAACGCCATCCATCATTGGAATCGCAGTACTCCTCAATGCAGCAGCAGTTTGTGCCAAGTCAAAGTCACCAGATCGAAGACATAGTTGCAGATTACATTCCCATTGAAATTCCAAAACTCAATGGAAGTTTCGGTCTTAATGTTACGGGTGGGCCAGAACTCGATGGAATTTATGTCAAGTCCCTGCTCCCTGGTGGAGCGGCAGAGGCATCGGGAAAAATACGAAATGGTGACAGAATAGTGGAGATCAATGGAGTAGCAATGGAAGGACTCAATCGCAAACAGGCAGTGGAGTTGTTAAGACGCTCTGCGGCTACTGCAACACTTGTGATTGAGCGCTACAGACAACCAGAACCTGAAGGTCCTCATCTGGAAGATTTGGAGGATCTTCTTAGAACATCGCCAAATTGTATCCTCGTGGAGCTACAGAAAATGAACCATTCATTTGGTTTTAGTGTTGTGGGAGGGCCAGATTTCGGTGGAATTTTCGTAAAAACTATCAATCCAAATGGCGCAGCGGCGATGGACGGCAGAATAGGAATAAACGACAGAATAGTGGCTGTAAACTGCGTGAACCTTACAAGAGCGACGAGACAAGAGGCGGTTGACGCTCTTCGAAACTCTCCAATCATTGCTCAGCTAGTTGTAGAGAAAGGTACAGCTGAAGACCTCATGACAAACAGTAGTGGGCCCCCCACCCCTCAGGAGTCAAGATATGGAGCAGTGCAGTACAGTCATTACCATGCTAACTCGGACAGTTATAATGACTACAGCATGGACGATCTACCGTTTGAAGTCTATCTTACCAAAGGCCAAAGTGGACTGGGTATGAGTCTCACGGGAGGAGATAACGGAGCTCCGATCTACATTAAGAAACTGGTGCCTGGAGGCTCAGCTCTCTTGTCAGGGCAGCTCCAAGTCAATGACATCATTCTTCAAGTGAACAACAAGAATTTGGATCGAATGACCTACAGAGAAGCGCTTTCTATCCTTCGCAACTGCCCTTCAGAAGTTCGACTACTTGTACAAAGACCCCGGATGTCATCGCATCCCCCTTACCCAGGATACCGCGGGGGCAGCGACAGAGCCAGTGTTGATAGTTACGGAAGCTATAGCAGCATGTCAAGTATTTTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12923	Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2
Q64512	Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2
A0A140LI67	FERM and PDZ domain-containing protein 2 OS=Mus musculus OX=10090 GN=Frmpd2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002205 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF09380 all species →	FERM_C	FERM C-terminal PH-like domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR052074 all species →	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR018980 all species →	Domain	FERM, C-terminal PH-like domain	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900 all species →	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3820.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.