Gene detail

Detailed information of evm.model.Ap2.3873 in Astrangia poculata

Genomic Location: Ap2:39789174...39795178
NR annotation: XP_044173534.1, uncharacterized protein LOC114947587 [Acropora millepora]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3873

atgcttggttacacactatgcttggcaaagtgtgttcttgttccaacagggcgaataatgtttctgggtttgttggtcgactcgaatcttcaggcgttcttgattccggacgccaaaaaagagaagtttgctgcagtacgagaaagtttgctttctcgcaaggtttcagtcccggtgaagttgctccagaagatgatgggaaaatgtatatctttcactcttgcgtttcccggtgcaaagttttacattcgtgaaatggcgtcagctattgggtcagcggcttggaaactagatgcccccttttcgccctcattaagagaagaattgacattctggcgtttcctggactcttgggctgaccacattccgtggaggaaggaggagcatgtggcgctgtcgctctccactgacgcatctcagtcgcgttgggcggccgtggtccacacgggttcgcgtgagttggcgtttggagatttttgggaagaggagctcctcgcgatgaatatcaatgtcaaagaattgtgggcggttgctaagtcgatagagtccctccctgtggaagttcgggactgtcgtgtagatattcaagtgcataaccaggctattatccatacttggcatggaagaggttctcgttccaaggaccttaaccgggtggcgcagcatattttttctcttgtctctgagaggaacattgctttttccttgcattatgtaccgtctggattaaatgcagcggactggttttcaagacgtttttcccgtcaagaggccatgctgtcaccgagatgttggcaaatcgtgcaggctgagtttggtggtgaaagaggtcacactttggatctcatggctcttgatagtaatgtcatgagagataagctgggtaggcccctgaaacactttacaccgtatccaaccccaggttcagcaggtataaacgtgttcaatcaagatttacgtgaatgtgatggcatcgtgatcaatgagtatgtttttccgcccttcgctcttatttctcctttgctcagatttcttctctctcaggatgctgtagttacagttgtcttattacctcgagtcccgaggctgtttgtgccagcggtcagttgtccgagttgtagataccctaatgatgaagagtttcgattttgtcaacggtgcggctattcgagacctgttccttgttcgccgacccctcaacctttgagggttcctatagaccttgcccagattgaggcacgaaaagaagctttattcagacgcaagcagtcaaccccatattctagacaaaaatcatcgttagagaaagaacttgcgtcgttttactggggaaaaacaaaggtgcacttagactcgtgcccagcgtttggaacgaaaaacccattgaagtgcgcttgtccgactcgcttggcctttggtacggttgattcgttgattggcaagctgagagcgatttttgctgcactgggccgtggttcagatgactcagggctacctggaggagctaaagttactggaaagagagaagatctagtcgcaagggtaaatgattatataaaaaatggaatggacaaagatattgtcgacccagatggtggagtaaatatagccaagaaaagaaaactattaggagtcgctgaagttgtcgatcctgaagtaagcgaaaactttcctagcggtggatttcaatgtcgtattgctgtactgccaaggatatcctttagccacatttggaaatatttaattgaagaagttgaactaagaaagaagttggcaacagaaaagccgattgcaaaaggttataatttttataaatctggccatgttcgccaaattttttcaaaaaaagaaggagaaaaatttttcattaaaagcattgttctgccatcaatgaaaaaaggaactgtgtacacggtaaaagttgtacttaatcaaagtggagatattgctaaggcatgttgtggctgccctgctggtgtggatggccaatgtaaccacctggctgcaaccctttttgcaatagaagatcaatggagcaatgttcctcatgatacaaatagtgctgaaagtcaggaacaactcaatgtaccttgtacctcccaaccatgtcaatggaatttaccgaagaaaagaaaattggatacagagccaatccaatcactaaaatttcagaaacatgagtatggtaaaaaggagaagaaacattttgcaagaggtcaggatgatggtagagctcctcatcaaaggacaatcaccgatagtgagcttaaggactttcatgatcaggtaaaaaaggttgagctggcaactggtaaaaaaataggcctcagtttcatattgcctcacagtcttccagagagtaatagtcaagagccagcgacacagcatcctcacaatgatgttaacattttacaaaagtggaaactagtttcccctgacaaagttcatccaatgtcaattggtgatatatccctcaaggcagagagagtaaagaaaaggttatttgaagcagcaagtgaaagaaatgaaatagaaaaagaaacaagggatcaacacacttctgtcttgtggtacaacattcgtcagccacgaataacagcatcacagtgcaaaagatgccttttgagggaagctaccagcccaacaaaggccatttcagaggttcttatgtacaagccaatcattcaaaccagactcatgaaggagggaattgagatggaacctaaaattatagaacagttcagcaaggaaacaggaaatgttgtgaggaaatgtggattttttctttcagaaacccacccctttttaggggcaagtccagatggtattactgagagaggacgtttagttgaagttaaaaaagtaacttcaaaagaaggggaatccatggaggataccctatgtagacttggtatttacaaacaaatgaataataacattgttttgaacaaaaaccacaagtacttttaccaaattcagcaacaacttttctgcagtaactacaaagaatcacattttattgtgtcaaatggagtttcgttgaaccatgaagtagttgaatttgacaacactttctggcatagcacacttcaaaaacttgagaaatttttccttcaaaacattttccccgaagtggtctatccaagagttctccatggtcaaactcgctggaataaggagatagatttcccccccatcagattgtag

Transcript

evm.model.Ap2.3873

ATGCTTGGTTACACACTATGCTTGGCAAAGTGTGTTCTTGTTCCAACAGGGCGAATAATGTTTCTGGGTTTGTTGGTCGACTCGAATCTTCAGGCGTTCTTGATTCCGGACGCCAAAAAAGAGAAGTTTGCTGCAGTACGAGAAAGTTTGCTTTCTCGCAAGGTTTCAGTCCCGGTGAAGTTGCTCCAGAAGATGATGGGAAAATGTATATCTTTCACTCTTGCGTTTCCCGGTGCAAAGTTTTACATTCGTGAAATGGCGTCAGCTATTGGGTCAGCGGCTTGGAAACTAGATGCCCCCTTTTCGCCCTCATTAAGAGAAGAATTGACATTCTGGCGTTTCCTGGACTCTTGGGCTGACCACATTCCGTGGAGGAAGGAGGAGCATGTGGCGCTGTCGCTCTCCACTGACGCATCTCAGTCGCGTTGGGCGGCCGTGGTCCACACGGGTTCGCGTGAGTTGGCGTTTGGAGATTTTTGGGAAGAGGAGCTCCTCGCGATGAATATCAATGTCAAAGAATTGTGGGCGGTTGCTAAGTCGATAGAGTCCCTCCCTGTGGAAGTTCGGGACTGTCGTGTAGATATTCAAGTGCATAACCAGGCTATTATCCATACTTGGCATGGAAGAGGTTCTCGTTCCAAGGACCTTAACCGGGTGGCGCAGCATATTTTTTCTCTTGTCTCTGAGAGGAACATTGCTTTTTCCTTGCATTATGTACCGTCTGGATTAAATGCAGCGGACTGGTTTTCAAGACGTTTTTCCCGTCAAGAGGCCATGCTGTCACCGAGATGTTGGCAAATCGTGCAGGCTGAGTTTGGTGGTGAAAGAGGTCACACTTTGGATCTCATGGCTCTTGATAGTAATGTCATGAGAGATAAGCTGGGTAGGCCCCTGAAACACTTTACACCGTATCCAACCCCAGGTTCAGCAGGTATAAACGTGTTCAATCAAGATTTACGTGAATGTGATGGCATCGTGATCAATGAGTATGTTTTTCCGCCCTTCGCTCTTATTTCTCCTTTGCTCAGATTTCTTCTCTCTCAGGATGCTGTAGTTACAGTTGTCTTATTACCTCGAGTCCCGAGGCTGTTTGTGCCAGCGGTCAGTTGTCCGAGTTGTAGATACCCTAATGATGAAGAGTTTCGATTTTGTCAACGGTGCGGCTATTCGAGACCTGTTCCTTGTTCGCCGACCCCTCAACCTTTGAGGGTTCCTATAGACCTTGCCCAGATTGAGGCACGAAAAGAAGCTTTATTCAGACGCAAGCAGTCAACCCCATATTCTAGACAAAAATCATCGTTAGAGAAAGAACTTGCGTCGTTTTACTGGGGAAAAACAAAGGTGCACTTAGACTCGTGCCCAGCGTTTGGAACGAAAAACCCATTGAAGTGCGCTTGTCCGACTCGCTTGGCCTTTGGTACGGTTGATTCGTTGATTGGCAAGCTGAGAGCGATTTTTGCTGCACTGGGCCGTGGTTCAGATGACTCAGGGCTACCTGGAGGAGCTAAAGTTACTGGAAAGAGAGAAGATCTAGTCGCAAGGGTAAATGATTATATAAAAAATGGAATGGACAAAGATATTGTCGACCCAGATGGTGGAGTAAATATAGCCAAGAAAAGAAAACTATTAGGAGTCGCTGAAGTTGTCGATCCTGAAGTAAGCGAAAACTTTCCTAGCGGTGGATTTCAATGTCGTATTGCTGTACTGCCAAGGATATCCTTTAGCCACATTTGGAAATATTTAATTGAAGAAGTTGAACTAAGAAAGAAGTTGGCAACAGAAAAGCCGATTGCAAAAGGTTATAATTTTTATAAATCTGGCCATGTTCGCCAAATTTTTTCAAAAAAAGAAGGAGAAAAATTTTTCATTAAAAGCATTGTTCTGCCATCAATGAAAAAAGGAACTGTGTACACGGTAAAAGTTGTACTTAATCAAAGTGGAGATATTGCTAAGGCATGTTGTGGCTGCCCTGCTGGTGTGGATGGCCAATGTAACCACCTGGCTGCAACCCTTTTTGCAATAGAAGATCAATGGAGCAATGTTCCTCATGATACAAATAGTGCTGAAAGTCAGGAACAACTCAATGTACCTTGTACCTCCCAACCATGTCAATGGAATTTACCGAAGAAAAGAAAATTGGATACAGAGCCAATCCAATCACTAAAATTTCAGAAACATGAGTATGGTAAAAAGGAGAAGAAACATTTTGCAAGAGGTCAGGATGATGGTAGAGCTCCTCATCAAAGGACAATCACCGATAGTGAGCTTAAGGACTTTCATGATCAGGTAAAAAAGGTTGAGCTGGCAACTGGTAAAAAAATAGGCCTCAGTTTCATATTGCCTCACAGTCTTCCAGAGAGTAATAGTCAAGAGCCAGCGACACAGCATCCTCACAATGATGTTAACATTTTACAAAAGTGGAAACTAGTTTCCCCTGACAAAGTTCATCCAATGTCAATTGGTGATATATCCCTCAAGGCAGAGAGAGTAAAGAAAAGGTTATTTGAAGCAGCAAGTGAAAGAAATGAAATAGAAAAAGAAACAAGGGATCAACACACTTCTGTCTTGTGGTACAACATTCGTCAGCCACGAATAACAGCATCACAGTGCAAAAGATGCCTTTTGAGGGAAGCTACCAGCCCAACAAAGGCCATTTCAGAGGTTCTTATGTACAAGCCAATCATTCAAACCAGACTCATGAAGGAGGGAATTGAGATGGAACCTAAAATTATAGAACAGTTCAGCAAGGAAACAGGAAATGTTGTGAGGAAATGTGGATTTTTTCTTTCAGAAACCCACCCCTTTTTAGGGGCAAGTCCAGATGGTATTACTGAGAGAGGACGTTTAGTTGAAGTTAAAAAAGTAACTTCAAAAGAAGGGGAATCCATGGAGGATACCCTATGTAGACTTGGTATTTACAAACAAATGAATAATAACATTGTTTTGAACAAAAACCACAAGTACTTTTACCAAATTCAGCAACAACTTTTCTGCAGTAACTACAAAGAATCACATTTTATTGTGTCAAATGGAGTTTCGTTGAACCATGAAGTAGTTGAATTTGACAACACTTTCTGGCATAGCACACTTCAAAAACTTGAGAAATTTTTCCTTCAAAACATTTTCCCCGAAGTGGTCTATCCAAGAGTTCTCCATGGTCAAACTCGCTGGAATAAGGAGATAGATTTCCCCCCCATCAGATTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9FGH2	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana OX=3702 GN=LSH5 PE=1 SV=1
Q9LW68	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1
A2Y3I2	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04852 all species →	ALOG_dom	ALOG domain	Domain	Interproscan
PF09588 all species →	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006936 all species →	Domain	ALOG domain	Interproscan
IPR019080 all species →	Domain	YqaJ viral recombinase	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR007527 all species →	Domain	Zinc finger, SWIM-type	Interproscan
IPR011604 all species →	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47526 all species →	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3873.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.