Gene detail

Detailed information of evm.model.Ap2.3880 in Astrangia poculata

Genomic Location: Ap2:39872240...39894681
NR annotation: XP_022806796.1, talin-2-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3880

atggcactgacactgaaaatcaacattatccagaatagctctgtcaagacattacagttcaacccagaagccactatagcagaagcactgagaatcataagagaaagagttccaggttctagtccaggaaaaatttcagattatggtttatttaagcaagatgatgatccagcaaaaggaaaatggttagaacctgccagaacccttgacttctacccactcaagtctggcgatatgcttgattacaagtctaaagttagacatctaaaaatcaaattcatggatggatcagtaaaaacattacagattgatgacagtcacaatgttggtcaaattttagactctgtctgtatgaagatggggattgccaatgttgaagaattctcactgcttgttgagggtcagaaagaagacaaagaagatgcagaaaaaatgggaacaataaagcgggacaaatcagtgaaagatgtatccctgaaaaagatggaggaaagagacaagaaaaaaatggatcaactaaagaaaaaactccacacagatgatgaagttcactggcttgaccatgacaaaactcttcgggaacaaggggttgacgatacatgcacagttcttttgaggcggaagtacttttactcagatcaaaatgttgacatcaaggacccagttcagcttgggttgttgtatgttcagtgtagagatggtatcttagatggaacccatccttgtacacaggaggaggcatcacagcttggagctattcagattcaagtccagtttggtgattttgaagaaggcaaatacaagtttatagacttaaaggaatttcttcccaaggaatatgtcaaatcaaagaatattgacaagaaaataaaagaggaacacaggaaagtttcagggcatgacgagttgcagggcaagtacaagtatgtgcagttgtgccgagggttaaagacctatggagtcacattctttcttgttaaagaaaaaatgaaaggaaagaataaactagttcccaggcttttgggtgtcacaaaagagagcatccttagagttgatgagaaaactaaggaggtgatgaagacctggcctctgactacagtcagacgctgggcagcttcaccaaacagttttacactggattttggggattacttggagtcttattactcagtacaaacaaatgaaggagagaaaatatcacagcttattgcaggttacatagacatcatcttgaaaaagagaaaaggtcaagaaggctatgatccagattttgatgaagaatccacaatggtagaagattccgtgactccatcaaagggcacatacttggaacgtcaaacaaacaaggttggccatgctgcaactggatcagtggctttgccagctgtgatgagagctggaggtccaggagcttccaggtacagtgtgggtaagatggagccagcccagtatggaacagttacaggatctgcacattctgctcataggccacccatgggctcacaagctaagctccacagtcttactccagcacagaaggcatacatgggtagtctaagtcatgggctggacaccattgtatcagcagaacaggacctgggatctccagctgagattcctgcccttggatctgatccagcatcactgaagtggaaacagaacactctagacctttccagacaaaatgtggcatccaggcttgctgctctgtcagcatcctgtgcttcaattgtcacactgacttcaggtgagccagaggaaacaaactatactgcggctggggctgctgtgaacaccatctcctcaaacttacaagacttatcaaaagggatcaaaatgattgctggtttattggatgatgacgatgatggtaaaaatcttttggatgctacacgtggcctggcaggcgccttttcaaatcttctgaaggctgctcaagaaggaggggcagcagacagcgagacatggctaagacctggaaatattgatgacattgaggtgggtaccctgtgccctactgggtacaggttcttacatgtccctagaccatacggcagaggaggaggagttggtttattgttcaaagatagtcttgatattaacacctcagccacggattcctttgaaacattcgaattcatggatgtccgactccgaagcctccagagtgttagaattctaatcgtctatcgaccgccaaacaacatgtcgtatgccctgttttttgatgaattttcgagattgcttgaacatgtattatccgagccctctgctagtttaatgattgctggtgatctaaactttcacatggaaaattctcacaatgtccatactaagcagttctttgaaattcttgaaacttttgatcttaaacaacacgtctgttctgctactcatgcaagtggccacaccctggatttgctgataacaagattaaatgagcagattgttagaaacattaagatccgtgacccgatgatctctgaccatcttgtggtgctgtgtaacctatctctcaagaaacctcaatttagaaaaaaagttatcagctcccgaaaactgcgcaccttagatattgactctttttgcgaggatgttcgtaattctaagattgtccaggaacaacccatggacttagacagtgcagttcaccaatatgataacgttcttcgatcactgttggaccaacatgccccgctaagaaagcgtttggtgacaatacgacctgctgcaccttggtattcgccgaacgtcgctaccgagaaacgaattaaacgacgactagagagaaaatggcggaagtctcggctccaaagtgatcgggaagcatacctctga

Transcript

evm.model.Ap2.3880

ATGGCACTGACACTGAAAATCAACATTATCCAGAATAGCTCTGTCAAGACATTACAGTTCAACCCAGAAGCCACTATAGCAGAAGCACTGAGAATCATAAGAGAAAGAGTTCCAGGTTCTAGTCCAGGAAAAATTTCAGATTATGGTTTATTTAAGCAAGATGATGATCCAGCAAAAGGAAAATGGTTAGAACCTGCCAGAACCCTTGACTTCTACCCACTCAAGTCTGGCGATATGCTTGATTACAAGTCTAAAGTTAGACATCTAAAAATCAAATTCATGGATGGATCAGTAAAAACATTACAGATTGATGACAGTCACAATGTTGGTCAAATTTTAGACTCTGTCTGTATGAAGATGGGGATTGCCAATGTTGAAGAATTCTCACTGCTTGTTGAGGGTCAGAAAGAAGACAAAGAAGATGCAGAAAAAATGGGAACAATAAAGCGGGACAAATCAGTGAAAGATGTATCCCTGAAAAAGATGGAGGAAAGAGACAAGAAAAAAATGGATCAACTAAAGAAAAAACTCCACACAGATGATGAAGTTCACTGGCTTGACCATGACAAAACTCTTCGGGAACAAGGGGTTGACGATACATGCACAGTTCTTTTGAGGCGGAAGTACTTTTACTCAGATCAAAATGTTGACATCAAGGACCCAGTTCAGCTTGGGTTGTTGTATGTTCAGTGTAGAGATGGTATCTTAGATGGAACCCATCCTTGTACACAGGAGGAGGCATCACAGCTTGGAGCTATTCAGATTCAAGTCCAGTTTGGTGATTTTGAAGAAGGCAAATACAAGTTTATAGACTTAAAGGAATTTCTTCCCAAGGAATATGTCAAATCAAAGAATATTGACAAGAAAATAAAAGAGGAACACAGGAAAGTTTCAGGGCATGACGAGTTGCAGGGCAAGTACAAGTATGTGCAGTTGTGCCGAGGGTTAAAGACCTATGGAGTCACATTCTTTCTTGTTAAAGAAAAAATGAAAGGAAAGAATAAACTAGTTCCCAGGCTTTTGGGTGTCACAAAAGAGAGCATCCTTAGAGTTGATGAGAAAACTAAGGAGGTGATGAAGACCTGGCCTCTGACTACAGTCAGACGCTGGGCAGCTTCACCAAACAGTTTTACACTGGATTTTGGGGATTACTTGGAGTCTTATTACTCAGTACAAACAAATGAAGGAGAGAAAATATCACAGCTTATTGCAGGTTACATAGACATCATCTTGAAAAAGAGAAAAGGTCAAGAAGGCTATGATCCAGATTTTGATGAAGAATCCACAATGGTAGAAGATTCCGTGACTCCATCAAAGGGCACATACTTGGAACGTCAAACAAACAAGGTTGGCCATGCTGCAACTGGATCAGTGGCTTTGCCAGCTGTGATGAGAGCTGGAGGTCCAGGAGCTTCCAGGTACAGTGTGGGTAAGATGGAGCCAGCCCAGTATGGAACAGTTACAGGATCTGCACATTCTGCTCATAGGCCACCCATGGGCTCACAAGCTAAGCTCCACAGTCTTACTCCAGCACAGAAGGCATACATGGGTAGTCTAAGTCATGGGCTGGACACCATTGTATCAGCAGAACAGGACCTGGGATCTCCAGCTGAGATTCCTGCCCTTGGATCTGATCCAGCATCACTGAAGTGGAAACAGAACACTCTAGACCTTTCCAGACAAAATGTGGCATCCAGGCTTGCTGCTCTGTCAGCATCCTGTGCTTCAATTGTCACACTGACTTCAGGTGAGCCAGAGGAAACAAACTATACTGCGGCTGGGGCTGCTGTGAACACCATCTCCTCAAACTTACAAGACTTATCAAAAGGGATCAAAATGATTGCTGGTTTATTGGATGATGACGATGATGGTAAAAATCTTTTGGATGCTACACGTGGCCTGGCAGGCGCCTTTTCAAATCTTCTGAAGGCTGCTCAAGAAGGAGGGGCAGCAGACAGCGAGACATGGCTAAGACCTGGAAATATTGATGACATTGAGGTGGGTACCCTGTGCCCTACTGGGTACAGGTTCTTACATGTCCCTAGACCATACGGCAGAGGAGGAGGAGTTGGTTTATTGTTCAAAGATAGTCTTGATATTAACACCTCAGCCACGGATTCCTTTGAAACATTCGAATTCATGGATGTCCGACTCCGAAGCCTCCAGAGTGTTAGAATTCTAATCGTCTATCGACCGCCAAACAACATGTCGTATGCCCTGTTTTTTGATGAATTTTCGAGATTGCTTGAACATGTATTATCCGAGCCCTCTGCTAGTTTAATGATTGCTGGTGATCTAAACTTTCACATGGAAAATTCTCACAATGTCCATACTAAGCAGTTCTTTGAAATTCTTGAAACTTTTGATCTTAAACAACACGTCTGTTCTGCTACTCATGCAAGTGGCCACACCCTGGATTTGCTGATAACAAGATTAAATGAGCAGATTGTTAGAAACATTAAGATCCGTGACCCGATGATCTCTGACCATCTTGTGGTGCTGTGTAACCTATCTCTCAAGAAACCTCAATTTAGAAAAAAAGTTATCAGCTCCCGAAAACTGCGCACCTTAGATATTGACTCTTTTTGCGAGGATGTTCGTAATTCTAAGATTGTCCAGGAACAACCCATGGACTTAGACAGTGCAGTTCACCAATATGATAACGTTCTTCGATCACTGTTGGACCAACATGCCCCGCTAAGAAAGCGTTTGGTGACAATACGACCTGCTGCACCTTGGTATTCGCCGAACGTCGCTACCGAGAAACGAATTAAACGACGACTAGAGAGAAAATGGCGGAAGTCTCGGCTCCAAAGTGATCGGGAAGCATACCTCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4G6	Talin-2 OS=Homo sapiens OX=9606 GN=TLN2 PE=1 SV=4
Q71LX4	Talin-2 OS=Mus musculus OX=10090 GN=Tln2 PE=1 SV=3
Q9Y490	Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002127 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16511 all species →	FERM_f0	N-terminal or F0 domain of Talin-head FERM	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF09379 all species →	FERM_N	FERM N-terminal domain	Domain	Interproscan
PF09141 all species →	Talin_middle	Talin, middle domain	Domain	Interproscan
PF14529 all species →	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR032425 all species →	Domain	Talin, N-terminal F0 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR036476 all species →	Homologous_superfamily	Talin, central domain superfamily	Interproscan
IPR018979 all species →	Domain	FERM, N-terminal	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR015224 all species →	Domain	Talin, central	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19981 all species →	TALIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0001726 all species →	Cellular Component	ruffle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3880.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.