Detailed information of evm.model.Ap2.3881 in Astrangia poculata

Genomic Location: Ap2:39894788...39923211
NR annotation: KAJ7393841.1, hypothetical protein OS493_003508 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A3G2LGI8Talin OS=Oscarella pearsei OX=1940113 GN=TLN PE=1 SV=1
Q9Y4G6Talin-2 OS=Homo sapiens OX=9606 GN=TLN2 PE=1 SV=4
P54939Talin-1 OS=Gallus gallus OX=9031 GN=TLN1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002127 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08913
all species →
VBSVinculin Binding SiteDomainInterproscan
PF21692
all species →
Talin_R4Talin, R4 domainDomainInterproscan
PF00078
all species →
RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036723
all species →
Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan
IPR035964
all species →
Homologous_superfamilyI/LWEQ domain superfamilyInterproscan
IPR015009
all species →
DomainVinculin-binding site-containing domainInterproscan
IPR049108
all species →
DomainTalin, R4 domainInterproscan
IPR000477
all species →
DomainReverse transcriptase domainInterproscan
IPR037438
all species →
DomainTalin-1/2, rod-segmentInterproscan
IPR043502
all species →
Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19981
all species →
TALINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0051015
all species →
Molecular Functionactin filament bindingInterproscan
GO:0003779
all species →
Molecular Functionactin bindingInterproscan
GO:0005178
all species →
Molecular Functionintegrin bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0005925
all species →
Cellular Componentfocal adhesionInterproscan
GO:0098609
all species →
Biological Processcell-cell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.3881.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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