Gene detail

Detailed information of evm.model.Ap2.3899 in Astrangia poculata

Genomic Location: Ap2:40147797...40156309
NR annotation: XP_020615511.1, AP-4 complex subunit epsilon-1-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3899

atgcttgaagcttgcttgtctgttaatcaactgaaagttattagtttaacagtaagtgatgtccttgacatgattctcaaatatgcgccagacacctcatggtatattctgaccatcaatgaagtgtttgaacttggtggatcacttgtcagagaaggtgtggctcacaacttgacgagactcctagctgaaggaaacgacgatgaagaagcagacaacgaaacccgtcgattcgctgtgttgtcctacatagaccttcttgaaaaacccgttttacctgatattctggtttgggttatatgctgggtgttaggtgaatattcatacacagcatctgagtacgaacctcaattcattctggaacaacttttctctttactggaaaggaaattcgaagatcccagtaccaaaggctggatcattactgctgttggaaaactgacgtcacaaattggacagctgcgtgatggcaccagacatgtgttagaaagacacgtgactggtgtagatgttgagctcagacaggtggacgaatcattgtcgttcttggatgatttagtatcagaagcactatctagtggagcttctccatacaggtctgcgagtgaacgaaatatagacacaaagaacaaagaggttccagtttcgcagccgagtctaaagttcacaccttacgagaatccgatgaaaaagccaagcaaactgctaccagaatcaactgtaacgcctgaagtaaaacacaaaccaaaggctgcaaactctcctaaagaacctagagatgtcgaaaccaacgtaaaaagcacaagccatgcgaaaaccatcgaggcgtctccttccagtaacaaactcttttcaggacaggccgtgtggggacctgggggctatgcaaaagatcgtgcgaggtctgagtccgtggagtctggaaataaatctgattcctcgtcgcggagctctgggtctgacaggcaaacagttgtaaagacaaaagccgaggtcagtgccagttcttctgtgagttcttctcatgaagaagacgtccgcaaacaacaacttgctgctcagcttttcactggtgtcacagagaaaccacgttcatctgaaggcagaggtcatttgacagcaaacaggatctcaagaaaaacaaagtcaattgctactgaccctgtaatgccatcagccaatgatcgatggcattctcttcaaggcacaacttcaaagagtgctggtaaattgaatgtggaccttctgttagatcttgagagcagcgaagttcatgatattgaaggacacaaagtttcctccgagaaggatatcctgctctcgcctttggacaatgcagtcaacataatacggtcacaggatgacgaaactttagataacaaccaggagtcggttgattctgattctcgtttggagatgaacccaagtgagcctgatcaggacactcaaaagggtacacctttactggacgaagacatcacggaacaaattcaccggttggagctcacaggctcatcgtcagcatcgttaccagaagacttggtcaattttccgcattctccagaagctcttgaactctgtttcgatagtaatcttcgtgttactctccaaaaggtctggaaacctctcgaacttgtgcttgttctttatctgaccaatcagaatcaagctaacgctccaatcagtgacgtcatcagcgtgttggagccaccgtccaatctgattggttcgtttgattcttcaacaagcaatagacttcaggatgataccattggaccccttgactgggcgaggcaccaaatcgttttaaaatacagatctcccgcacttcacatgaacttcggtggcaagatttcgtacaaagatcctaacaagacattaaagcatttgttttttaatcatactctgagtatcattgacattttacggcctcttgtgataaacacagaggagtatggacagaaatggactgaagcttcgtttgaaaagaaacagcgagtaccgagttcattgaaaaactgtcaagacatctccaagacagctgaagaacgactacgactttacacggtggaacaaataggtaccaaagttatatttgctggtaccgtgatggagtgtgggatatgcctgttacacgtcagctgtgttggtgacgagttagaactgtcaatcaagtcgaacaacagacttttaaatgatgcgttgatgaaacactgtgtgactgtcttcagataa

Transcript

evm.model.Ap2.3899

ATGCTTGAAGCTTGCTTGTCTGTTAATCAACTGAAAGTTATTAGTTTAACAGTAAGTGATGTCCTTGACATGATTCTCAAATATGCGCCAGACACCTCATGGTATATTCTGACCATCAATGAAGTGTTTGAACTTGGTGGATCACTTGTCAGAGAAGGTGTGGCTCACAACTTGACGAGACTCCTAGCTGAAGGAAACGACGATGAAGAAGCAGACAACGAAACCCGTCGATTCGCTGTGTTGTCCTACATAGACCTTCTTGAAAAACCCGTTTTACCTGATATTCTGGTTTGGGTTATATGCTGGGTGTTAGGTGAATATTCATACACAGCATCTGAGTACGAACCTCAATTCATTCTGGAACAACTTTTCTCTTTACTGGAAAGGAAATTCGAAGATCCCAGTACCAAAGGCTGGATCATTACTGCTGTTGGAAAACTGACGTCACAAATTGGACAGCTGCGTGATGGCACCAGACATGTGTTAGAAAGACACGTGACTGGTGTAGATGTTGAGCTCAGACAGGTGGACGAATCATTGTCGTTCTTGGATGATTTAGTATCAGAAGCACTATCTAGTGGAGCTTCTCCATACAGGTCTGCGAGTGAACGAAATATAGACACAAAGAACAAAGAGGTTCCAGTTTCGCAGCCGAGTCTAAAGTTCACACCTTACGAGAATCCGATGAAAAAGCCAAGCAAACTGCTACCAGAATCAACTGTAACGCCTGAAGTAAAACACAAACCAAAGGCTGCAAACTCTCCTAAAGAACCTAGAGATGTCGAAACCAACGTAAAAAGCACAAGCCATGCGAAAACCATCGAGGCGTCTCCTTCCAGTAACAAACTCTTTTCAGGACAGGCCGTGTGGGGACCTGGGGGCTATGCAAAAGATCGTGCGAGGTCTGAGTCCGTGGAGTCTGGAAATAAATCTGATTCCTCGTCGCGGAGCTCTGGGTCTGACAGGCAAACAGTTGTAAAGACAAAAGCCGAGGTCAGTGCCAGTTCTTCTGTGAGTTCTTCTCATGAAGAAGACGTCCGCAAACAACAACTTGCTGCTCAGCTTTTCACTGGTGTCACAGAGAAACCACGTTCATCTGAAGGCAGAGGTCATTTGACAGCAAACAGGATCTCAAGAAAAACAAAGTCAATTGCTACTGACCCTGTAATGCCATCAGCCAATGATCGATGGCATTCTCTTCAAGGCACAACTTCAAAGAGTGCTGGTAAATTGAATGTGGACCTTCTGTTAGATCTTGAGAGCAGCGAAGTTCATGATATTGAAGGACACAAAGTTTCCTCCGAGAAGGATATCCTGCTCTCGCCTTTGGACAATGCAGTCAACATAATACGGTCACAGGATGACGAAACTTTAGATAACAACCAGGAGTCGGTTGATTCTGATTCTCGTTTGGAGATGAACCCAAGTGAGCCTGATCAGGACACTCAAAAGGGTACACCTTTACTGGACGAAGACATCACGGAACAAATTCACCGGTTGGAGCTCACAGGCTCATCGTCAGCATCGTTACCAGAAGACTTGGTCAATTTTCCGCATTCTCCAGAAGCTCTTGAACTCTGTTTCGATAGTAATCTTCGTGTTACTCTCCAAAAGGTCTGGAAACCTCTCGAACTTGTGCTTGTTCTTTATCTGACCAATCAGAATCAAGCTAACGCTCCAATCAGTGACGTCATCAGCGTGTTGGAGCCACCGTCCAATCTGATTGGTTCGTTTGATTCTTCAACAAGCAATAGACTTCAGGATGATACCATTGGACCCCTTGACTGGGCGAGGCACCAAATCGTTTTAAAATACAGATCTCCCGCACTTCACATGAACTTCGGTGGCAAGATTTCGTACAAAGATCCTAACAAGACATTAAAGCATTTGTTTTTTAATCATACTCTGAGTATCATTGACATTTTACGGCCTCTTGTGATAAACACAGAGGAGTATGGACAGAAATGGACTGAAGCTTCGTTTGAAAAGAAACAGCGAGTACCGAGTTCATTGAAAAACTGTCAAGACATCTCCAAGACAGCTGAAGAACGACTACGACTTTACACGGTGGAACAAATAGGTACCAAAGTTATATTTGCTGGTACCGTGATGGAGTGTGGGATATGCCTGTTACACGTCAGCTGTGTTGGTGACGAGTTAGAACTGTCAATCAAGTCGAACAACAGACTTTTAAATGATGCGTTGATGAAACACTGTGTGACTGTCTTCAGATAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002707 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14807 all species →	AP4E_app_platf	Adaptin AP4 complex epsilon appendage platform	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR050840 all species →	Family	Adaptor Complexes Large Subunit	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR028269 all species →	Domain	AP-4 complex subunit epsilon-1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22780 all species →	ADAPTIN, ALPHA/GAMMA/EPSILON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030124 all species →	Cellular Component	AP-4 adaptor complex	Interproscan
GO:0140312 all species →	Molecular Function	cargo adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3899.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.