Gene detail

Detailed information of evm.model.Ap2.3926 in Astrangia poculata

Genomic Location: Ap2:40509557...40534263
NR annotation: XP_020601750.1, ceramide synthase 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3926

atggcggtcggtcggttttcctgctgctctgcaacttttgtcgtgtttatggtcatattattactgttgcaagcgcctgtccagactggaaagattacaagtttcgcctcctcgctagctgtaacatctaaactagatgtcaagcattttcctggtcgaaattcaggattacatcgccgcccacgtgcgctgaatgttccgccatcgcttaaacttcaaacaggtttggagcttgtaaacatctcgctcgccgcttcgttttttgtcattcttgccggtgatgttagcctaaatcctggaccgatcagggatccatgtgttttgtgtgctaagggctgtcgaatgaatcaaaaggccgtgcaatgtgatgaatgtgatcgctggtttcatgcaaaatgcatgaacatgaagaaccatgaatattttattgcttgcgactcgactgcaaactggtcttgcacggactgcctgtttcctggaccattttctcctaacagttctgactgtaatacgcacacttctacggctccaaacgatttaaatgatccggaaattcgtctggtaagaggtctcaagatcgcgcatctgaacatcaatagacttgtaaacaagatggacggcgttcgagaattattctcaacttatgatttcgacgtgcttgctttaagtgaaacttggctctcgtcaaacataactgacgatgaaattagtatacctggatatacattggcacggaaagaccgtagtggatcagcaaagttaaacggtggaggagttttgatttacatccgtgagaacattcctttccatgtcaaaaacgaactagcggcaaacaatgaagagttattatggatcgaagtcaacagacaaaagtgtaaaccacttctgattgtcgctgcatataagccaccagacatgaaagaaactatttttattgactccctgagaaactcctttgcgcacattgactttgaaaggaacggtatagtgcttctgggtgattttaacatcgatttactcgggaaaagtaccgctaacagattattaaagtcttttgcaattgaattggacatcaggcagattatagataagccaacaagaattactgagcactcaaaaactcttattgacttgatctttaccaacattgatcacaggattgttcaatctggcgttcttcaaacaagtctaagcgatcacagcctaatattttgtgttatgaaagcaggtgtttctaaagctccacctaggaaatttgaatatcgttcattcaagaactacaataagaaggcgtttgttgatgatcttaatcaagtgccgtggtcagttgcaaagtcaacgttcatgatcattggtagcaaatccagactaagtcaatttaacgatatagatcttatggctaataacagtcaactggagaaagtaacagaattcaagtaccttggtgtaactataaaccagcacctaacctggcatgaccatattgatcaaattcaaagaaaagtctcgaaaaggctgggagttttacggagaattaaacatctgcttcctgtctatgctcggaaaatgtacgtcacgacaatggtcattccaatacttgaatatgccagtattgtttggggcgataaaaacaacaagatcctaatggattcaatccaagttttacaaaataaagccgctaaattgatcctggataggtcgacgcattcgtcttcatccgaagcactatcagatctgaactggacaaacctcggtccgctgtcgtacagttctcctgttgttgtgttttttgatcgtgggtatccatgcttcaggaatttcaattccattatccctgttgatattattagggtgaagtcttatgtgaattgcctctttgactctgcgtttgtaccagtgtgggtcacgatcaataaactttacctcattccaaagtgggtagtgtccagtgttgtgggatggtacaaaggaatgcctattcctcaagacataaacacagggaatttggtagtagcaaggttttattttcactctatatatgccacactgttcatggaccagtggaaaagcgattccatccttatgataatgcatcacattctagctaatttcattattctcttctcatttgcaatcaggtatcataaaattgctgttctggtgttgtttttacatgatgccaatgatgttaaactggagtttactaaactctgtttggcattcaagtggcgtggcagaaaataccatttcataccagacatcctcagtatcgtgggatttttgtccttggcattactgtggtatcataaaattgctgttctggtgttgtttttacatgatgccaatgatgttaaactggagtttactaaactctgtttggcattcaagtggcgtggcagaaaataccatttcataccagacatcctcagtatcgtgggatttttgtccttggcattactgtggttttattgtcgtctgtacctctacccaattaaagtactttactcatgtgcctgccttagtgtgcaaatccttcctgcagctccgttatactttttcttcaatgcaatgctttgggcgttgttttttatgaacgtatggtggtttcagattattgtaaggctcataatccgtatcatcattggaaaaagccgtggcgtggaagaccctcgagagattccaaaagagacacagaaggatagagagcctggtaacatagcaaatggaaaattgttagaaaatggagagctgccggctacaaatcatgttgttgaaaggaattataacaaagagaggagagaagaaaatggtgaacagaaagacttcaaagagcaaacccgccgtagacagccatgtactaaacctggcaatccatga

Transcript

evm.model.Ap2.3926

ATGGCGGTCGGTCGGTTTTCCTGCTGCTCTGCAACTTTTGTCGTGTTTATGGTCATATTATTACTGTTGCAAGCGCCTGTCCAGACTGGAAAGATTACAAGTTTCGCCTCCTCGCTAGCTGTAACATCTAAACTAGATGTCAAGCATTTTCCTGGTCGAAATTCAGGATTACATCGCCGCCCACGTGCGCTGAATGTTCCGCCATCGCTTAAACTTCAAACAGGTTTGGAGCTTGTAAACATCTCGCTCGCCGCTTCGTTTTTTGTCATTCTTGCCGGTGATGTTAGCCTAAATCCTGGACCGATCAGGGATCCATGTGTTTTGTGTGCTAAGGGCTGTCGAATGAATCAAAAGGCCGTGCAATGTGATGAATGTGATCGCTGGTTTCATGCAAAATGCATGAACATGAAGAACCATGAATATTTTATTGCTTGCGACTCGACTGCAAACTGGTCTTGCACGGACTGCCTGTTTCCTGGACCATTTTCTCCTAACAGTTCTGACTGTAATACGCACACTTCTACGGCTCCAAACGATTTAAATGATCCGGAAATTCGTCTGGTAAGAGGTCTCAAGATCGCGCATCTGAACATCAATAGACTTGTAAACAAGATGGACGGCGTTCGAGAATTATTCTCAACTTATGATTTCGACGTGCTTGCTTTAAGTGAAACTTGGCTCTCGTCAAACATAACTGACGATGAAATTAGTATACCTGGATATACATTGGCACGGAAAGACCGTAGTGGATCAGCAAAGTTAAACGGTGGAGGAGTTTTGATTTACATCCGTGAGAACATTCCTTTCCATGTCAAAAACGAACTAGCGGCAAACAATGAAGAGTTATTATGGATCGAAGTCAACAGACAAAAGTGTAAACCACTTCTGATTGTCGCTGCATATAAGCCACCAGACATGAAAGAAACTATTTTTATTGACTCCCTGAGAAACTCCTTTGCGCACATTGACTTTGAAAGGAACGGTATAGTGCTTCTGGGTGATTTTAACATCGATTTACTCGGGAAAAGTACCGCTAACAGATTATTAAAGTCTTTTGCAATTGAATTGGACATCAGGCAGATTATAGATAAGCCAACAAGAATTACTGAGCACTCAAAAACTCTTATTGACTTGATCTTTACCAACATTGATCACAGGATTGTTCAATCTGGCGTTCTTCAAACAAGTCTAAGCGATCACAGCCTAATATTTTGTGTTATGAAAGCAGGTGTTTCTAAAGCTCCACCTAGGAAATTTGAATATCGTTCATTCAAGAACTACAATAAGAAGGCGTTTGTTGATGATCTTAATCAAGTGCCGTGGTCAGTTGCAAAGTCAACGTTCATGATCATTGGTAGCAAATCCAGACTAAGTCAATTTAACGATATAGATCTTATGGCTAATAACAGTCAACTGGAGAAAGTAACAGAATTCAAGTACCTTGGTGTAACTATAAACCAGCACCTAACCTGGCATGACCATATTGATCAAATTCAAAGAAAAGTCTCGAAAAGGCTGGGAGTTTTACGGAGAATTAAACATCTGCTTCCTGTCTATGCTCGGAAAATGTACGTCACGACAATGGTCATTCCAATACTTGAATATGCCAGTATTGTTTGGGGCGATAAAAACAACAAGATCCTAATGGATTCAATCCAAGTTTTACAAAATAAAGCCGCTAAATTGATCCTGGATAGGTCGACGCATTCGTCTTCATCCGAAGCACTATCAGATCTGAACTGGACAAACCTCGGTCCGCTGTCGTACAGTTCTCCTGTTGTTGTGTTTTTTGATCGTGGGTATCCATGCTTCAGGAATTTCAATTCCATTATCCCTGTTGATATTATTAGGGTGAAGTCTTATGTGAATTGCCTCTTTGACTCTGCGTTTGTACCAGTGTGGGTCACGATCAATAAACTTTACCTCATTCCAAAGTGGGTAGTGTCCAGTGTTGTGGGATGGTACAAAGGAATGCCTATTCCTCAAGACATAAACACAGGGAATTTGGTAGTAGCAAGGTTTTATTTTCACTCTATATATGCCACACTGTTCATGGACCAGTGGAAAAGCGATTCCATCCTTATGATAATGCATCACATTCTAGCTAATTTCATTATTCTCTTCTCATTTGCAATCAGGTATCATAAAATTGCTGTTCTGGTGTTGTTTTTACATGATGCCAATGATGTTAAACTGGAGTTTACTAAACTCTGTTTGGCATTCAAGTGGCGTGGCAGAAAATACCATTTCATACCAGACATCCTCAGTATCGTGGGATTTTTGTCCTTGGCATTACTGTGGTATCATAAAATTGCTGTTCTGGTGTTGTTTTTACATGATGCCAATGATGTTAAACTGGAGTTTACTAAACTCTGTTTGGCATTCAAGTGGCGTGGCAGAAAATACCATTTCATACCAGACATCCTCAGTATCGTGGGATTTTTGTCCTTGGCATTACTGTGGTTTTATTGTCGTCTGTACCTCTACCCAATTAAAGTACTTTACTCATGTGCCTGCCTTAGTGTGCAAATCCTTCCTGCAGCTCCGTTATACTTTTTCTTCAATGCAATGCTTTGGGCGTTGTTTTTTATGAACGTATGGTGGTTTCAGATTATTGTAAGGCTCATAATCCGTATCATCATTGGAAAAAGCCGTGGCGTGGAAGACCCTCGAGAGATTCCAAAAGAGACACAGAAGGATAGAGAGCCTGGTAACATAGCAAATGGAAAATTGTTAGAAAATGGAGAGCTGCCGGCTACAAATCATGTTGTTGAAAGGAATTATAACAAAGAGAGGAGAGAAGAAAATGGTGAACAGAAAGACTTCAAAGAGCAAACCCGCCGTAGACAGCCATGTACTAAACCTGGCAATCCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P27544	Ceramide synthase 1 OS=Homo sapiens OX=9606 GN=CERS1 PE=1 SV=1
P27545	Ceramide synthase 1 OS=Mus musculus OX=10090 GN=Cers1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003090 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF03798 all species →	TRAM_LAG1_CLN8	TLC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR006634 all species →	Domain	TRAM/LAG1/CLN8 homology domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR016439 all species →	Family	Sphingosine N-acyltransferase Lag1/Lac1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12560 all species →	LONGEVITY ASSURANCE FACTOR 1 LAG1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0050291 all species →	Molecular Function	sphingosine N-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3926.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.