Gene detail

Detailed information of evm.model.Ap2.4002 in Astrangia poculata

Genomic Location: Ap2:41334639...41355436
NR annotation: CAH3103349.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.4002

atgaagtctcatctgccatccattcacacctatgcggacgatacacagctatatatatcgtttaatcctgttgataacaccagtgaggctgaggccgtgattgcgattgaaaactgtattcaagatgttcgcgcatggatgagagatgataagctgatgcttaacgacgacaaaactgagttcttgatcattggcacggaaagacagttattgagggtgtccgtagacaagatcaagatcggccaagctgaggtatcgcccgtctcttcagtgcgcaatttggggacctggtttgattctcatctggacatgtcgactcatgtgactaaggcttgcgctagcgcgttttattatctgtacaatatccggcacattaggaagtatctgtctcgtgagtccaccgagaggcttgttcacgcgttcatcacaagcaggctggattattgtaatagtttattgtacggcgctcctgagcatcaaattaagaaacttcaaagagtcatgaatgccagtgcacgattagtttaccgcgcacctaaaactgatatagaaggcggtggtggaggtccgctcctcaagggtgtagcagtgggtgctagtttaaaggctaaatttgaaaagcttgcaagaaattccagtgatctgtcagacatcgacataaagtattacgccacaacggacttaccagacaaacttccaacaactttggacgatttggtggagttcattgatcagtttccttcaagattggagaaagtcaataacggtcaaggaattccattgcagtttgtactgctgccgataaatttcgcccttcaaacagccgagccgccgtttatgttaccgaaaggcatcgaaaaccgcatggagcaatactttgacgatctttgtactgcccagtctcttgttgaagagtacaagcacagtatgaaggtcgacgaggatgacgataccgtgtccgattttgagatggagctcacccaagttaagtacgaatttgaagatgcaattcctgtaatggcttcaagcggtggaaaagatcaagtggatgcttgtcttgaatcttatcaaacggctctacttggagaaaagcaacttgttggaaaattctgcaaaaaatgggagaagataatgaaggataagaaagctgcgccaacaactagtatcaagctacctccaggagatcctcttacagttgttcttcttggaaagactggaaatggaaaaagtgccacaggaaacactatagttggtatcaagtgcttccaggaaagcccaagtgcgagttccgcgacaagaaaatgtggttttgacaagagaaatgacgagagggttgtttgtgtgatagacactccagggatcatggatacgtttccactcacgagaatagcgaaattcaaagaaaaggctaaggactttaccggcctcttcaaagaaacacaagaggaaattctgcgagaggtagccaaaatctttcttttggctcctgacgggttcgacgccataatcctgaccgtaaagtacggcgttagacttgattggcatgacactgaggctttaaaaatacttcttacatttcttgaagaagtagctaaaagatacatgattcttctctttacaaatggtgatgaggccaaacgtacaggagaggaccttaaaggttacctggaggggctcccagattgtgttaaagaatttattgaggaaatagagcacagaaccattttgttcgacaatactttgatggatcctccaagtcgtcctgatgaaaacatgaagcagttgtccagattaatccagatgattgacaacatcagaaacaaagaagggggatcgtttatgcatagactgaacacagcctctgaaaaaattctggacgaatcgattaaagaggcaatggccacttccggattgactcaacagcgtgacgagctcacaagaagagatgaagagcttgcagaatctcagagacaacttgaagaaaaagaaaatgaaaaagaaaaagaaaaagccaataaagaaaaagggaaattagaaaaagaaaaggccaaaaacgaagaggaaatgaaagaattacaagagggagttcgaaaacaacacactgacgatgctcaaactgattcaggattactaaactctttcaagaaaaaaattggcggttgttatcccggatcggccatcgttactgataaacatggacgaagaagacaaatgaagtttttgcaacttggtgaagaggttgaagtcatcactaaaaatggtattcaattagaacctgtaatcacctttatccaccgtcaaccagaggttacacaggaattcctcaagatcacaaccacggaaaacaacatcttgaagatcactgaagaccacctgctgtttgtagagaagatgggccaagcagcagccatccctgccagagatgtgaaagtcggagacacagtgttcgtgagaggaaagcacggtatagagaaggatgcagttcagagcatcagcactgtctacgagaaaggtgtttacgccccagtgaccctcagtggcaccattctggtcaacaatgtgcacacctcgtgttactttgatgtgctgtctcatgagtggtcccacagggccatgggtgttgctcgcgccgtgcattatgtgtccccttggatgctgcagtggatcagtggtgttggacagaaggatggattcccaggctggtgcagattggctcataagatgctcactttgttggactga

Transcript

evm.model.Ap2.4002

ATGAAGTCTCATCTGCCATCCATTCACACCTATGCGGACGATACACAGCTATATATATCGTTTAATCCTGTTGATAACACCAGTGAGGCTGAGGCCGTGATTGCGATTGAAAACTGTATTCAAGATGTTCGCGCATGGATGAGAGATGATAAGCTGATGCTTAACGACGACAAAACTGAGTTCTTGATCATTGGCACGGAAAGACAGTTATTGAGGGTGTCCGTAGACAAGATCAAGATCGGCCAAGCTGAGGTATCGCCCGTCTCTTCAGTGCGCAATTTGGGGACCTGGTTTGATTCTCATCTGGACATGTCGACTCATGTGACTAAGGCTTGCGCTAGCGCGTTTTATTATCTGTACAATATCCGGCACATTAGGAAGTATCTGTCTCGTGAGTCCACCGAGAGGCTTGTTCACGCGTTCATCACAAGCAGGCTGGATTATTGTAATAGTTTATTGTACGGCGCTCCTGAGCATCAAATTAAGAAACTTCAAAGAGTCATGAATGCCAGTGCACGATTAGTTTACCGCGCACCTAAAACTGATATAGAAGGCGGTGGTGGAGGTCCGCTCCTCAAGGGTGTAGCAGTGGGTGCTAGTTTAAAGGCTAAATTTGAAAAGCTTGCAAGAAATTCCAGTGATCTGTCAGACATCGACATAAAGTATTACGCCACAACGGACTTACCAGACAAACTTCCAACAACTTTGGACGATTTGGTGGAGTTCATTGATCAGTTTCCTTCAAGATTGGAGAAAGTCAATAACGGTCAAGGAATTCCATTGCAGTTTGTACTGCTGCCGATAAATTTCGCCCTTCAAACAGCCGAGCCGCCGTTTATGTTACCGAAAGGCATCGAAAACCGCATGGAGCAATACTTTGACGATCTTTGTACTGCCCAGTCTCTTGTTGAAGAGTACAAGCACAGTATGAAGGTCGACGAGGATGACGATACCGTGTCCGATTTTGAGATGGAGCTCACCCAAGTTAAGTACGAATTTGAAGATGCAATTCCTGTAATGGCTTCAAGCGGTGGAAAAGATCAAGTGGATGCTTGTCTTGAATCTTATCAAACGGCTCTACTTGGAGAAAAGCAACTTGTTGGAAAATTCTGCAAAAAATGGGAGAAGATAATGAAGGATAAGAAAGCTGCGCCAACAACTAGTATCAAGCTACCTCCAGGAGATCCTCTTACAGTTGTTCTTCTTGGAAAGACTGGAAATGGAAAAAGTGCCACAGGAAACACTATAGTTGGTATCAAGTGCTTCCAGGAAAGCCCAAGTGCGAGTTCCGCGACAAGAAAATGTGGTTTTGACAAGAGAAATGACGAGAGGGTTGTTTGTGTGATAGACACTCCAGGGATCATGGATACGTTTCCACTCACGAGAATAGCGAAATTCAAAGAAAAGGCTAAGGACTTTACCGGCCTCTTCAAAGAAACACAAGAGGAAATTCTGCGAGAGGTAGCCAAAATCTTTCTTTTGGCTCCTGACGGGTTCGACGCCATAATCCTGACCGTAAAGTACGGCGTTAGACTTGATTGGCATGACACTGAGGCTTTAAAAATACTTCTTACATTTCTTGAAGAAGTAGCTAAAAGATACATGATTCTTCTCTTTACAAATGGTGATGAGGCCAAACGTACAGGAGAGGACCTTAAAGGTTACCTGGAGGGGCTCCCAGATTGTGTTAAAGAATTTATTGAGGAAATAGAGCACAGAACCATTTTGTTCGACAATACTTTGATGGATCCTCCAAGTCGTCCTGATGAAAACATGAAGCAGTTGTCCAGATTAATCCAGATGATTGACAACATCAGAAACAAAGAAGGGGGATCGTTTATGCATAGACTGAACACAGCCTCTGAAAAAATTCTGGACGAATCGATTAAAGAGGCAATGGCCACTTCCGGATTGACTCAACAGCGTGACGAGCTCACAAGAAGAGATGAAGAGCTTGCAGAATCTCAGAGACAACTTGAAGAAAAAGAAAATGAAAAAGAAAAAGAAAAAGCCAATAAAGAAAAAGGGAAATTAGAAAAAGAAAAGGCCAAAAACGAAGAGGAAATGAAAGAATTACAAGAGGGAGTTCGAAAACAACACACTGACGATGCTCAAACTGATTCAGGATTACTAAACTCTTTCAAGAAAAAAATTGGCGGTTGTTATCCCGGATCGGCCATCGTTACTGATAAACATGGACGAAGAAGACAAATGAAGTTTTTGCAACTTGGTGAAGAGGTTGAAGTCATCACTAAAAATGGTATTCAATTAGAACCTGTAATCACCTTTATCCACCGTCAACCAGAGGTTACACAGGAATTCCTCAAGATCACAACCACGGAAAACAACATCTTGAAGATCACTGAAGACCACCTGCTGTTTGTAGAGAAGATGGGCCAAGCAGCAGCCATCCCTGCCAGAGATGTGAAAGTCGGAGACACAGTGTTCGTGAGAGGAAAGCACGGTATAGAGAAGGATGCAGTTCAGAGCATCAGCACTGTCTACGAGAAAGGTGTTTACGCCCCAGTGACCCTCAGTGGCACCATTCTGGTCAACAATGTGCACACCTCGTGTTACTTTGATGTGCTGTCTCATGAGTGGTCCCACAGGGCCATGGGTGTTGCTCGCGCCGTGCATTATGTGTCCCCTTGGATGCTGCAGTGGATCAGTGGTGTTGGACAGAAGGATGGATTCCCAGGCTGGTGCAGATTGGCTCATAAGATGCTCACTTTGTTGGACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9T0F4	Immune-associated nucleotide-binding protein 13 OS=Arabidopsis thaliana OX=3702 GN=IAN13 PE=3 SV=1
Q9T0F2	Immune-associated nucleotide-binding protein 11 OS=Arabidopsis thaliana OX=3702 GN=IAN11 PE=2 SV=1
Q9T0F3	Immune-associated nucleotide-binding protein 12 OS=Arabidopsis thaliana OX=3702 GN=IAN12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001280 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04548 all species →	AIG1	AIG1 family	Domain	Interproscan
PF01079 all species →	Hint	Hint module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045058 all species →	Family	GTPase GIMA/IAN/Toc	Interproscan
IPR006141 all species →	PTM	Intein N-terminal splicing region	Interproscan
IPR003586 all species →	Domain	Hint domain C-terminal	Interproscan
IPR001657 all species →	Family	Hedgehog protein	Interproscan
IPR006703 all species →	Domain	AIG1-type guanine nucleotide-binding (G) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003587 all species →	Domain	Hint domain N-terminal	Interproscan
IPR001767 all species →	Domain	Hedgehog protein, Hint domain	Interproscan
IPR036844 all species →	Homologous_superfamily	Hint domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10903 all species →	GTPASE, IMAP FAMILY MEMBER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016539 all species →	Biological Process	intein-mediated protein splicing	Interproscan
GO:0007267 all species →	Biological Process	cell-cell signaling	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016540 all species →	Biological Process	protein autoprocessing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.4002.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.