Detailed information of evm.model.Ap2.4020 in Astrangia poculata

Genomic Location: Ap2:41495779...41506573
NR annotation: CAH3103321.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0A1L8H0H2DNA-binding protein RFX7 OS=Xenopus laevis OX=8355 GN=rfx7.L PE=2 SV=1
Q2KHR2DNA-binding protein RFX7 OS=Homo sapiens OX=9606 GN=RFX7 PE=1 SV=2
F8VPJ6DNA-binding protein RFX7 OS=Mus musculus OX=10090 GN=Rfx7 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006718 (this species only)
Transcription factor familyRFX · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02257
all species →		RFX_DNA_bindingRFX DNA-binding domainDomainInterproscan
PF18326
all species →		RFX5_NRFX5 N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003150
all species →		DomainDNA-binding RFX-type winged-helix domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.Ap2.4020. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09175RFX7; DNA-binding protein RFX7-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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