Gene detail

Detailed information of evm.model.Ap2.4091 in Astrangia poculata

Genomic Location: Ap2:42153769...42162355
NR annotation: XP_027058296.1, 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.4091

atggggattccgggaattaaaagatcatataaccgctgtttaatcagcaaaaatgaaagatattttagcgaagatatctttggacacaattcaagacaaataattcaggttccgcacagaggaagctaccaacttgaagactgcgaaagcagaagaaaatgggttgaacaattcacctccgcttccctctcaaacgttggacaatggtgggatcctcgtacttcccagggatattccagtgaaaatctaacagggaatatagaaaacccaataggattggctaagattccgctgggcgcagctggcccactgcttatcaagggagattatgtgcaggatgaactaattgtttgtccttttgccacaacagaaggtgctcttgtcgcctctgtttctcgaggtgctactgctatcaccagatgtggaggtgtcacagcacgtgttataaagcgccggatcacgagagtaccacatttcgtcactgattccatgcaccaagctcaccaactgtctgagtggctcattgctcatttggacgagctgaaatcaaaagcaagggaggtcagccagcactgcaagcttcaatcattggaaccatggtttattggtcgtaatcttctgatggaatttgtctacgattctgctgatgccgctgggcaaaatggtgtcactgttaccacgtggcacgcttgtaagtgggcaatggagaagatagcccaggagcgtcctgatatcaacatccgggaacatttcgttgaaacaaagttgagtggtgataaaagtgcacttcctaaaaactacataacgggtcgtggaattgaggttcaggccgaaacttatattactgagtctacattgaaaagtgtgctgaaggagagatcaaatttacagccacttatttcattttatggtataacgatgaacttcatgccggagatttatgccggtcacagtgcaatgcctttgatgctagaagtcgattcccataaaatgacaaggcttttcagggcatttcagttggccacgcagagatctggtttattcggaatcaatatagcggtcagtaacacaatcgccgccatatcagccgctactgggcaggacctgggctcggtgcatgaaaattcctgggccgtgtttgagttctcagcggaaaatgaaataaaagttgtgggaactgaaaccggcaatgcgttgaataaagttgcaagtgaaaagattgagcctggaatatatgccagtcttgttctacccacgcttgtgattggaacagtgggtggtggaacacagacaccaacagccaaagaatctcttagtatgattggctgcttcggaaagggtggaatttatcggtttgcagaaatcattgcatcattcgcactggcaatggaaatctctacgttgtcagcaatagccagtgaccagtttgcaaatggcatcagtgcagatgataagaaggttgcatccctcaataatgccactcccccaaagaatgcaactgaggcacgcagcttcctcggtttggaaaaataccttgaacgtttgtccatctctgctccaatccgtcaacttacgcatcaaaatgccttccaagttaccacagatcacaagccgttagaaactatcttcaacaaccccacttgcaaagcaactgcgcaagttgagaggctacagctacgcctacagccatacaaaaccaaagttgttaacaagccaggagcaaacaatcgggatgattacatgagtcgccatccggatcccaaacaatcgcaatcctccaaccatctatcaagagttgatgcatacattcactttgtaaccaataatgctgtgccccatgccgtaacgcttcaagaagtaaaagatgcgacagcagctgatgaaacattgcagagtttagcaagagtgatagcaactcaaaagtggcacgaggctctaagagcagatcaagcaggagttgtcagtatcaaatggcgtaattctgagaaggacccgcataatagttcccgagaagctacaagatcgaatgattatgctagctcacagtggacactaaggaattgtcaagaccaagcgtcttctgcgagattcagtctggtttccaggaatgatttctgtggcccatttccaagtggaaattacttgcttgtcgtgactgacgacttcagttggtttccagaatttgaaatcttgaggtcaacatcagcaaaggcagtgattcctcaccttgacagcatctttgccaggcaagggatccccgaggtagtaagaacagacaatggcccaccattcaaaagtgaaagttttcggaagtttgccactcatcttggtttcacacatcccagaataactcctgaatggcccagagcaaatggagaggcggagaggccgatgaagacacttgagaaagcaattacgacagccgtcgttcaaggcaagaactggaaacaacagttgtttatcttccttcgacagcacagggccaaccctcatagcaccacagggaagtctccttcggagttgctgaatggacgaaaactcaagtccacattacctccggtgcagtttgatcaggcatccccagagatcagacaagctgatgctaacagaaaggagaagatgaaagaggatgcagacaaatacaaccatgccaaaaacacggacctcaatgttggcgacaaagtattgataaagcaaccaaaacagaacaagatgtctacacctttcaagcctgaaccatttgagatcacagacaagaatcgaaaggaagcatga

Transcript

evm.model.Ap2.4091

ATGGGGATTCCGGGAATTAAAAGATCATATAACCGCTGTTTAATCAGCAAAAATGAAAGATATTTTAGCGAAGATATCTTTGGACACAATTCAAGACAAATAATTCAGGTTCCGCACAGAGGAAGCTACCAACTTGAAGACTGCGAAAGCAGAAGAAAATGGGTTGAACAATTCACCTCCGCTTCCCTCTCAAACGTTGGACAATGGTGGGATCCTCGTACTTCCCAGGGATATTCCAGTGAAAATCTAACAGGGAATATAGAAAACCCAATAGGATTGGCTAAGATTCCGCTGGGCGCAGCTGGCCCACTGCTTATCAAGGGAGATTATGTGCAGGATGAACTAATTGTTTGTCCTTTTGCCACAACAGAAGGTGCTCTTGTCGCCTCTGTTTCTCGAGGTGCTACTGCTATCACCAGATGTGGAGGTGTCACAGCACGTGTTATAAAGCGCCGGATCACGAGAGTACCACATTTCGTCACTGATTCCATGCACCAAGCTCACCAACTGTCTGAGTGGCTCATTGCTCATTTGGACGAGCTGAAATCAAAAGCAAGGGAGGTCAGCCAGCACTGCAAGCTTCAATCATTGGAACCATGGTTTATTGGTCGTAATCTTCTGATGGAATTTGTCTACGATTCTGCTGATGCCGCTGGGCAAAATGGTGTCACTGTTACCACGTGGCACGCTTGTAAGTGGGCAATGGAGAAGATAGCCCAGGAGCGTCCTGATATCAACATCCGGGAACATTTCGTTGAAACAAAGTTGAGTGGTGATAAAAGTGCACTTCCTAAAAACTACATAACGGGTCGTGGAATTGAGGTTCAGGCCGAAACTTATATTACTGAGTCTACATTGAAAAGTGTGCTGAAGGAGAGATCAAATTTACAGCCACTTATTTCATTTTATGGTATAACGATGAACTTCATGCCGGAGATTTATGCCGGTCACAGTGCAATGCCTTTGATGCTAGAAGTCGATTCCCATAAAATGACAAGGCTTTTCAGGGCATTTCAGTTGGCCACGCAGAGATCTGGTTTATTCGGAATCAATATAGCGGTCAGTAACACAATCGCCGCCATATCAGCCGCTACTGGGCAGGACCTGGGCTCGGTGCATGAAAATTCCTGGGCCGTGTTTGAGTTCTCAGCGGAAAATGAAATAAAAGTTGTGGGAACTGAAACCGGCAATGCGTTGAATAAAGTTGCAAGTGAAAAGATTGAGCCTGGAATATATGCCAGTCTTGTTCTACCCACGCTTGTGATTGGAACAGTGGGTGGTGGAACACAGACACCAACAGCCAAAGAATCTCTTAGTATGATTGGCTGCTTCGGAAAGGGTGGAATTTATCGGTTTGCAGAAATCATTGCATCATTCGCACTGGCAATGGAAATCTCTACGTTGTCAGCAATAGCCAGTGACCAGTTTGCAAATGGCATCAGTGCAGATGATAAGAAGGTTGCATCCCTCAATAATGCCACTCCCCCAAAGAATGCAACTGAGGCACGCAGCTTCCTCGGTTTGGAAAAATACCTTGAACGTTTGTCCATCTCTGCTCCAATCCGTCAACTTACGCATCAAAATGCCTTCCAAGTTACCACAGATCACAAGCCGTTAGAAACTATCTTCAACAACCCCACTTGCAAAGCAACTGCGCAAGTTGAGAGGCTACAGCTACGCCTACAGCCATACAAAACCAAAGTTGTTAACAAGCCAGGAGCAAACAATCGGGATGATTACATGAGTCGCCATCCGGATCCCAAACAATCGCAATCCTCCAACCATCTATCAAGAGTTGATGCATACATTCACTTTGTAACCAATAATGCTGTGCCCCATGCCGTAACGCTTCAAGAAGTAAAAGATGCGACAGCAGCTGATGAAACATTGCAGAGTTTAGCAAGAGTGATAGCAACTCAAAAGTGGCACGAGGCTCTAAGAGCAGATCAAGCAGGAGTTGTCAGTATCAAATGGCGTAATTCTGAGAAGGACCCGCATAATAGTTCCCGAGAAGCTACAAGATCGAATGATTATGCTAGCTCACAGTGGACACTAAGGAATTGTCAAGACCAAGCGTCTTCTGCGAGATTCAGTCTGGTTTCCAGGAATGATTTCTGTGGCCCATTTCCAAGTGGAAATTACTTGCTTGTCGTGACTGACGACTTCAGTTGGTTTCCAGAATTTGAAATCTTGAGGTCAACATCAGCAAAGGCAGTGATTCCTCACCTTGACAGCATCTTTGCCAGGCAAGGGATCCCCGAGGTAGTAAGAACAGACAATGGCCCACCATTCAAAAGTGAAAGTTTTCGGAAGTTTGCCACTCATCTTGGTTTCACACATCCCAGAATAACTCCTGAATGGCCCAGAGCAAATGGAGAGGCGGAGAGGCCGATGAAGACACTTGAGAAAGCAATTACGACAGCCGTCGTTCAAGGCAAGAACTGGAAACAACAGTTGTTTATCTTCCTTCGACAGCACAGGGCCAACCCTCATAGCACCACAGGGAAGTCTCCTTCGGAGTTGCTGAATGGACGAAAACTCAAGTCCACATTACCTCCGGTGCAGTTTGATCAGGCATCCCCAGAGATCAGACAAGCTGATGCTAACAGAAAGGAGAAGATGAAAGAGGATGCAGACAAATACAACCATGCCAAAAACACGGACCTCAATGTTGGCGACAAAGTATTGATAAAGCAACCAAAACAGAACAAGATGTCTACACCTTTCAAGCCTGAACCATTTGAGATCACAGACAAGAATCGAAAGGAAGCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YAS4	3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) OX=272557 GN=hmgA PE=3 SV=1
Q58116	3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=hmgA PE=3 SV=1
Q9V1R3	3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pyrococcus abyssi (strain GE5 / Orsay) OX=272844 GN=hmgA PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011812 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00368 all species →	HMG-CoA_red	Hydroxymethylglutaryl-coenzyme A reductase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002202 all species →	Family	Hydroxymethylglutaryl-CoA reductase, class I/II	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR023074 all species →	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain superfamily	Interproscan
IPR023076 all species →	Conserved_site	Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site	Interproscan
IPR009023 all species →	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR009029 all species →	Homologous_superfamily	Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10572 all species →	3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004420 all species →	Molecular Function	hydroxymethylglutaryl-CoA reductase (NADPH) activity	Interproscan
GO:0015936 all species →	Biological Process	coenzyme A metabolic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.4091.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.