Gene detail

Detailed information of evm.model.Ap2.459.2.5f15ddac in Astrangia poculata

Genomic Location: Ap2:4455055...4467055
NR annotation: KAJ7390333.1, transmembrane and TPR repeat-containing protein 1-like [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.459.2.5f15ddac

atggcggcgaatttgaagtcacgaagccacgaaacaagtcgaagacctttgagccataacaataactacgagttgtgtaatataccatttcctgacttaccaaagagtttaagatatggagtgattgcttttacctctgtagcgtgttatctgaatagcctggactacgatttggtacacgatgatgtattcgcgatcaaagaaaacttggacattcgcccggagactccactacgaaatatactgtcaaacgacttttggggcaagccaatgtcaagcaacagaagtcataagtcgtacagaccgctctgcacgttaacttttcgaatgaactacgcgattcatgggctagaacctttcggatatcatgcagcaaatgttgttttacatggattcgtttgcttgttgtacacgctcatgtgtgaggcggtggcgttcaagtcgaatgtacttgcatttctcgcaggacttttatttgctacacatcctgttcacacagaagctgtgacaggagttgtaggacgtgctgatgtactggcatgcatgctgtttttgctttcattcatgacctttgttaggtccacaggaaagaaaggctgctcctgtatcttatacatagtactttgtgtgatccttggttctatggcaatgcttgttaaagaacatggcattacagtgtttggtgtttgtgttgtctatgattgtttagtaatcaacaagcagttaatctggagactctttggagaaaggaaattccatgatgccgagttgtttaagctcctgttgatcagaatactagttctcactatatcagttctttctcttatggccttcagagtatggatgcttggaggtaatcttccacatttcacaacacaggacaatcctgcatcattctcagactcacttgcaactcgcatcatgacatattgttatctaattacctttaattcctggcttctgctgtcaccgagtgtgttgagctatgattggcagatgggcagcatacctctagtggagtcacccttggatttccgcaacctagcaacagtgatgtttgtcataatagtggcacttctggtttactctgctgtgttagcaaaaaggagccatggctgtgaacaggatgttcttgtgttatctctggctttgttatgtattccttttcttccggcttccaacctcttcttcagagtcggattcgttgttgctgaaagaattctgtatattccaagcatggggttttgtatgcttgttgtttgtggactcaacaaactggcatcaatcgtgggatataacagaaaactatctacagagtctagagatctacagagtgacaacagaaatggaaccaaaaaatctttcaactcttcatccggagtgacttcatacatgctgcacaaggttttactgtcaggagtttttgtactgataggattattttgctggaaagccgtggttcgtaatcgtgtgtggagcagcagggagaccttgtttagatctggggttgaaactcttccttacaatgctaaagcacattataactatgcgaattatctgaaagatgttggaaggaacaaggaagccatgtttcactacgagactgcccttcagttggctccagatcacgtcagcgctcataacaaccttggtaccctgttggaaaacaatgaggaagctatgaaacactttactcaggccattaagcatgatccttaccacgcaaactcgtacttcaatcttggaacacgcttggcgtctttaaagcgcttgtctgaagcagaagcaatgttgaaagaagcaatcaggttaaaaccgaattatttggatgctgtgatgaacactgctggtgtgcttagtgaacaacagaagtacgatgaagcagaagagttttacaagagagctttgactttagaaccccaaaacggtgatgcgtacaacaattatgcagtgttccttggcaacaggggtgagcaagaaagataa

Transcript

evm.model.Ap2.459.2.5f15ddac

ATGGCGGCGAATTTGAAGTCACGAAGCCACGAAACAAGTCGAAGACCTTTGAGCCATAACAATAACTACGAGTTGTGTAATATACCATTTCCTGACTTACCAAAGAGTTTAAGATATGGAGTGATTGCTTTTACCTCTGTAGCGTGTTATCTGAATAGCCTGGACTACGATTTGGTACACGATGATGTATTCGCGATCAAAGAAAACTTGGACATTCGCCCGGAGACTCCACTACGAAATATACTGTCAAACGACTTTTGGGGCAAGCCAATGTCAAGCAACAGAAGTCATAAGTCGTACAGACCGCTCTGCACGTTAACTTTTCGAATGAACTACGCGATTCATGGGCTAGAACCTTTCGGATATCATGCAGCAAATGTTGTTTTACATGGATTCGTTTGCTTGTTGTACACGCTCATGTGTGAGGCGGTGGCGTTCAAGTCGAATGTACTTGCATTTCTCGCAGGACTTTTATTTGCTACACATCCTGTTCACACAGAAGCTGTGACAGGAGTTGTAGGACGTGCTGATGTACTGGCATGCATGCTGTTTTTGCTTTCATTCATGACCTTTGTTAGGTCCACAGGAAAGAAAGGCTGCTCCTGTATCTTATACATAGTACTTTGTGTGATCCTTGGTTCTATGGCAATGCTTGTTAAAGAACATGGCATTACAGTGTTTGGTGTTTGTGTTGTCTATGATTGTTTAGTAATCAACAAGCAGTTAATCTGGAGACTCTTTGGAGAAAGGAAATTCCATGATGCCGAGTTGTTTAAGCTCCTGTTGATCAGAATACTAGTTCTCACTATATCAGTTCTTTCTCTTATGGCCTTCAGAGTATGGATGCTTGGAGGTAATCTTCCACATTTCACAACACAGGACAATCCTGCATCATTCTCAGACTCACTTGCAACTCGCATCATGACATATTGTTATCTAATTACCTTTAATTCCTGGCTTCTGCTGTCACCGAGTGTGTTGAGCTATGATTGGCAGATGGGCAGCATACCTCTAGTGGAGTCACCCTTGGATTTCCGCAACCTAGCAACAGTGATGTTTGTCATAATAGTGGCACTTCTGGTTTACTCTGCTGTGTTAGCAAAAAGGAGCCATGGCTGTGAACAGGATGTTCTTGTGTTATCTCTGGCTTTGTTATGTATTCCTTTTCTTCCGGCTTCCAACCTCTTCTTCAGAGTCGGATTCGTTGTTGCTGAAAGAATTCTGTATATTCCAAGCATGGGGTTTTGTATGCTTGTTGTTTGTGGACTCAACAAACTGGCATCAATCGTGGGATATAACAGAAAACTATCTACAGAGTCTAGAGATCTACAGAGTGACAACAGAAATGGAACCAAAAAATCTTTCAACTCTTCATCCGGAGTGACTTCATACATGCTGCACAAGGTTTTACTGTCAGGAGTTTTTGTACTGATAGGATTATTTTGCTGGAAAGCCGTGGTTCGTAATCGTGTGTGGAGCAGCAGGGAGACCTTGTTTAGATCTGGGGTTGAAACTCTTCCTTACAATGCTAAAGCACATTATAACTATGCGAATTATCTGAAAGATGTTGGAAGGAACAAGGAAGCCATGTTTCACTACGAGACTGCCCTTCAGTTGGCTCCAGATCACGTCAGCGCTCATAACAACCTTGGTACCCTGTTGGAAAACAATGAGGAAGCTATGAAACACTTTACTCAGGCCATTAAGCATGATCCTTACCACGCAAACTCGTACTTCAATCTTGGAACACGCTTGGCGTCTTTAAAGCGCTTGTCTGAAGCAGAAGCAATGTTGAAAGAAGCAATCAGGTTAAAACCGAATTATTTGGATGCTGTGATGAACACTGCTGGTGTGCTTAGTGAACAACAGAAGTACGATGAAGCAGAAGAGTTTTACAAGAGAGCTTTGACTTTAGAACCCCAAAACGGTGATGCGTACAACAATTATGCAGTGTTCCTTGGCAACAGGGGTGAGCAAGAAAGATAATGAGAGTTGCTGTTCACATACTGTTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UV71	Protein O-mannosyl-transferase TMTC1 OS=Mus musculus OX=10090 GN=Tmtc1 PE=2 SV=2
Q8IUR5	Protein O-mannosyl-transferase TMTC1 OS=Homo sapiens OX=9606 GN=TMTC1 PE=1 SV=3
Q7K4B6	Protein O-mannosyl-transferase Tmtc3 OS=Drosophila melanogaster OX=7227 GN=Tmtc3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR052943 all species →	Family	TMTC O-mannosyl-transferase	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44809 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.459.2.5f15ddac.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.