Genomic Location: Ap2:5861284...5872008
NR annotation: KAJ7336624.1, hypothetical protein OS493_011844 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.605 |
| Transcript |
| evm.model.Ap2.605 |
| Protein |
| evm.model.Ap2.605 |
| UniProt accession | Description |
|---|---|
| P0C6B8 | Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1 |
| Q6RUU0 | Pentraxin-4 OS=Mus musculus OX=10090 GN=Ptx4 PE=1 SV=2 |
| Q96A99 | Pentraxin-4 OS=Homo sapiens OX=9606 GN=PTX4 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008749 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF00354 all species → | Pentaxin | Pentaxin family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001759 all species → | Family | Pentraxin-related | Interproscan |
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR030476 all species → | Conserved_site | Pentaxin, conserved site | Interproscan |
| IPR051360 all species → | Family | Neuronal Pentraxin and Related | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19277 all species → | PENTRAXIN | Interproscan |
evm.model.Ap2.605. This gene does have a gene model — the search simply returned no hit.evm.model.Ap2.605.Transcript abundance of evm.model.Ap2.605 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
