Detailed information of evm.model.Ap2.663 in Astrangia poculata

Genomic Location: Ap2:6634640...6641980
NR annotation: XP_020627841.1, TATA box-binding protein-associated factor RNA polymerase I subunit B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004741 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap2.663. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR033599
all species →		FamilyRNA polymerase I transcription initiation factor TAF1B/Rrn7Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31576
all species →		TATA BOX-BINDING PROTEIN-ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001164
all species →		Molecular FunctionRNA polymerase I core promoter sequence-specific DNA bindingInterproscan
GO:0001188
all species →		Biological ProcessRNA polymerase I preinitiation complex assemblyInterproscan
GO:0005668
all species →		Cellular ComponentRNA polymerase transcription factor SL1 complexInterproscan
GO:0006360
all species →		Biological Processtranscription by RNA polymerase IInterproscan
GO:0042790
all species →		Biological Processnucleolar large rRNA transcription by RNA polymerase IInterproscan
GO:0070860
all species →		Cellular ComponentRNA polymerase I core factor complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.663.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap2.663 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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