Genomic Location: Ap2:6659722...6669628
NR annotation: XP_020627060.1, pre-mRNA-splicing factor SLU7-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.667 |
| Transcript |
| evm.model.Ap2.667 |
| Protein |
| evm.model.Ap2.667 |
| UniProt accession | Description |
|---|---|
| Q5ZIG2 | Pre-mRNA-splicing factor SLU7 OS=Gallus gallus OX=9031 GN=SLU7 PE=2 SV=1 |
| O95391 | Pre-mRNA-splicing factor SLU7 OS=Homo sapiens OX=9606 GN=SLU7 PE=1 SV=2 |
| Q4R4P2 | Pre-mRNA-splicing factor SLU7 OS=Macaca fascicularis OX=9541 GN=SLU7 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003394 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11708 all species → | Slu7 | Pre-mRNA splicing Prp18-interacting factor | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039974 all species → | Family | Pre-mRNA-splicing factor SLU7 | Interproscan |
| IPR021715 all species → | Domain | Pre-mRNA-splicing factor SLU7 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12942 all species → | STEP II SPLICING FACTOR SLU7 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000398 all species → | Biological Process | mRNA splicing, via spliceosome | Interproscan |
| GO:0005681 all species → | Cellular Component | spliceosomal complex | Interproscan |
| GO:0008380 all species → | Biological Process | RNA splicing | Interproscan |
| GO:0030628 all species → | Molecular Function | pre-mRNA 3'-splice site binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12819 | SLU7; pre-mRNA-processing factor SLU7 | - | Spliceosome | ko03041 | deepkoala |
Transcript abundance of evm.model.Ap2.667 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
