Gene detail

Detailed information of evm.model.Ap2.756 in Astrangia poculata

Genomic Location: Ap2:7698868...7713584
NR annotation: KAJ7385633.1, Actin-binding LIM protein 3 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6H8Q1	Actin-binding LIM protein 2 OS=Homo sapiens OX=9606 GN=ABLIM2 PE=1 SV=2
O14639	Actin-binding LIM protein 1 OS=Homo sapiens OX=9606 GN=ABLIM1 PE=1 SV=3
Q8K4G5	Actin-binding LIM protein 1 OS=Mus musculus OX=10090 GN=Ablim1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR051618 all species →	Family	Actin-binding LIM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24213 all species →	ACTIN-BINDING LIM PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030032 all species →	Biological Process	lamellipodium assembly	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07520	ABLIM; actin-binding LIM protein	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.