Detailed information of evm.model.Ap2.840 in Astrangia poculata

Genomic Location: Ap2:8660814...8661726
NR annotation: CAH3185250.1, unnamed protein product, partial [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O35382Exocyst complex component 4 OS=Mus musculus OX=10090 GN=Exoc4 PE=1 SV=2
Q62824Exocyst complex component 4 OS=Rattus norvegicus OX=10116 GN=Exoc4 PE=1 SV=1
Q96A65Exocyst complex component 4 OS=Homo sapiens OX=9606 GN=EXOC4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002963 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for evm.model.Ap2.840 in Astrangia poculata.
 InterPro
InterPro termTypeDescriptionSource
IPR039682
all species →		FamilyExocyst complex component Sec8/EXOC4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14146
all species →		EXOCYST COMPLEX COMPONENT 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000145
all species →		Cellular ComponentexocystInterproscan
GO:0006887
all species →		Biological ProcessexocytosisInterproscan
GO:0006893
all species →		Biological ProcessGolgi to plasma membrane transportInterproscan
GO:0090522
all species →		Biological Processvesicle tethering involved in exocytosisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.840.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap2.840 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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