Gene detail

Detailed information of evm.model.Ap3.1001 in Astrangia poculata

Genomic Location: Ap3:11032889...11051419
NR annotation: XP_020629906.1, nuclear cap-binding protein subunit 3-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZM19	Nuclear cap-binding protein subunit 3 OS=Gallus gallus OX=9031 GN=NCBP3 PE=2 SV=1
Q6DFQ2	Nuclear cap-binding protein subunit 3 OS=Xenopus tropicalis OX=8364 GN=ncbp3 PE=2 SV=1
Q6DE94	Nuclear cap-binding protein subunit 3 OS=Xenopus laevis OX=8355 GN=ncbp3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10309 all species →	NCBP3	Nuclear cap-binding protein subunit 3	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019416 all species →	Family	Nuclear cap-binding protein subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16291 all species →	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0000340 all species →	Molecular Function	RNA 7-methylguanosine cap binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1001.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.