Gene detail

Detailed information of evm.model.Ap3.1051 in Astrangia poculata

Genomic Location: Ap3:11573840...11586452
NR annotation: KAJ7356206.1, hypothetical protein OS493_025957 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1051

atgagcagcactggcttggccttttctggcggtggtattcggtcaggggcattctgctctggagtcttgcgcagactgctagagagtgaagttgaggtggattacttgagctgtgtatccgggggtggttacacaggcacagcctacctggactggaaatacagagaggagagacggcaaggaagcgacggggaagcccgaagagattggcacaaggagttctttgaccacatgagagataggacaggatacatctgcaactggaagaagccattccaaggaatcttcgatacaataattctgtcctgccttgttatcgcggtcgcattcgtgcagcctttgatcatatggggatcgtacgcatgcccaatagccttcatgatcgacgtcctctttggaaagtacttacgtgacaaggtggactgcgatgctgaggcgaaagcgtcagcggaagcatccggtaacatgactgatgctgtgttgtctaaattccaggccatccgaagacattgcctcgctcgacagggaactgacaagatttacaccgtcatactattcgctgctctgttcctcttatttatctcattttattttcttaatcgattaaaccggctttctccacttcagagttttttcgtccgccttagtcagtacacgtttagtgcgtttctgcttctcactttcatcccgtttagcattcatgacttcttcaataacatcccgctctgggcaaagatcctgctcgtgcctttgtgcataatactgtggttggttcttcccctgctacgaagcaaaacatcctatgttgtgattattttgttttattcttatgttactcactggaaggtgtacgaaggacaagaaattgcaattggcatcgtgttttcttacaagctatttcatcggttgcttttcgcatccggctttgtcttgtggattgtccctatagtggctgcaatgcacgagagacttgttcacatctataacagatggagacttcagagagcgttttatcaccgcgagggggtgggatcaacaggatgtgcagggatcgggttacaggacacctttgctctgtggacatgtctatcgtcgacaaatcaagggattcgagaggaggagaaactcttgacacttgcagatctgaaaggcgtgaagcctgaatacttggccaacattgtggtcaatcgctggaagaaaagcaaatcgtcccagcacagttatgagcttctgacaatgtctccttcaggaattgagcgtatagatcgcgacccaaacaacaaacagtttaaaggcaaactggagccggaggatgtgaagttatcagatgctatggccacctcggcggcggcactttctactcatatgggcaaatatgattactcggttaaagggctgactcgtctccatacaattattggactcgaaatgggtgccaccacgataagcgacattaaatcagtgagaagggaaagttgcacattgaggatattccttccatgtgttgtggatgttctgcgttgtctgccattaatagttgtaccggccctttaccatggttcagaaccatccgttaaaataggagtaataatcttcttcgctgtacatcttgtactggtcttcatcgccctcattgacactggagcggaacaaccaaaatggttggagaaagtagccaggtggttcatcgtacacatttctttcgtctattttgtgagagaaatgttttccaaggaaaacactggcccaatgccgccaccaatactgcttttaagcgatggaggccattgtgaaaaccttgccattttaccgctgttaaagagaaggctacgaaggatggttgttgttgatggtggttataagcatgacgaccaatactacggagacagccttttgaatgcactgatgcttgctcgtaacaagcttaactgttcgtttataagcgaagacggccaagacgttactttcgatctcttggagaagtttgtgagaccaaggacaggaggaaagcagcgttattacaaattcaaggttcgttaccaaagcgatgaattcggtgaagaaggcgaaggagaaattctactaatcgtaccaagagatccgcaacatggcgtaaatgacagaatggatggaaatcgttcgaccaatttgcatcctttcgatgcacccgacggcgtgttttttacacaagatgacgtcaataacttgactctctgttgctgcgagtgctgtcaccgacaagcttgtcaggggttgtccaagatatgttgtaacgtctttccacagcacagcactgctaatcagttcttcacatcccggatgttctcggcgtatcactgtgaagggtaccgcgcatgcgtagatgcctatgctgttggctttttgagaaatggtgacaaggaaagggagcaaaatgatgttaacattgtgtga

Transcript

evm.model.Ap3.1051

ATGAGCAGCACTGGCTTGGCCTTTTCTGGCGGTGGTATTCGGTCAGGGGCATTCTGCTCTGGAGTCTTGCGCAGACTGCTAGAGAGTGAAGTTGAGGTGGATTACTTGAGCTGTGTATCCGGGGGTGGTTACACAGGCACAGCCTACCTGGACTGGAAATACAGAGAGGAGAGACGGCAAGGAAGCGACGGGGAAGCCCGAAGAGATTGGCACAAGGAGTTCTTTGACCACATGAGAGATAGGACAGGATACATCTGCAACTGGAAGAAGCCATTCCAAGGAATCTTCGATACAATAATTCTGTCCTGCCTTGTTATCGCGGTCGCATTCGTGCAGCCTTTGATCATATGGGGATCGTACGCATGCCCAATAGCCTTCATGATCGACGTCCTCTTTGGAAAGTACTTACGTGACAAGGTGGACTGCGATGCTGAGGCGAAAGCGTCAGCGGAAGCATCCGGTAACATGACTGATGCTGTGTTGTCTAAATTCCAGGCCATCCGAAGACATTGCCTCGCTCGACAGGGAACTGACAAGATTTACACCGTCATACTATTCGCTGCTCTGTTCCTCTTATTTATCTCATTTTATTTTCTTAATCGATTAAACCGGCTTTCTCCACTTCAGAGTTTTTTCGTCCGCCTTAGTCAGTACACGTTTAGTGCGTTTCTGCTTCTCACTTTCATCCCGTTTAGCATTCATGACTTCTTCAATAACATCCCGCTCTGGGCAAAGATCCTGCTCGTGCCTTTGTGCATAATACTGTGGTTGGTTCTTCCCCTGCTACGAAGCAAAACATCCTATGTTGTGATTATTTTGTTTTATTCTTATGTTACTCACTGGAAGGTGTACGAAGGACAAGAAATTGCAATTGGCATCGTGTTTTCTTACAAGCTATTTCATCGGTTGCTTTTCGCATCCGGCTTTGTCTTGTGGATTGTCCCTATAGTGGCTGCAATGCACGAGAGACTTGTTCACATCTATAACAGATGGAGACTTCAGAGAGCGTTTTATCACCGCGAGGGGGTGGGATCAACAGGATGTGCAGGGATCGGGTTACAGGACACCTTTGCTCTGTGGACATGTCTATCGTCGACAAATCAAGGGATTCGAGAGGAGGAGAAACTCTTGACACTTGCAGATCTGAAAGGCGTGAAGCCTGAATACTTGGCCAACATTGTGGTCAATCGCTGGAAGAAAAGCAAATCGTCCCAGCACAGTTATGAGCTTCTGACAATGTCTCCTTCAGGAATTGAGCGTATAGATCGCGACCCAAACAACAAACAGTTTAAAGGCAAACTGGAGCCGGAGGATGTGAAGTTATCAGATGCTATGGCCACCTCGGCGGCGGCACTTTCTACTCATATGGGCAAATATGATTACTCGGTTAAAGGGCTGACTCGTCTCCATACAATTATTGGACTCGAAATGGGTGCCACCACGATAAGCGACATTAAATCAGTGAGAAGGGAAAGTTGCACATTGAGGATATTCCTTCCATGTGTTGTGGATGTTCTGCGTTGTCTGCCATTAATAGTTGTACCGGCCCTTTACCATGGTTCAGAACCATCCGTTAAAATAGGAGTAATAATCTTCTTCGCTGTACATCTTGTACTGGTCTTCATCGCCCTCATTGACACTGGAGCGGAACAACCAAAATGGTTGGAGAAAGTAGCCAGGTGGTTCATCGTACACATTTCTTTCGTCTATTTTGTGAGAGAAATGTTTTCCAAGGAAAACACTGGCCCAATGCCGCCACCAATACTGCTTTTAAGCGATGGAGGCCATTGTGAAAACCTTGCCATTTTACCGCTGTTAAAGAGAAGGCTACGAAGGATGGTTGTTGTTGATGGTGGTTATAAGCATGACGACCAATACTACGGAGACAGCCTTTTGAATGCACTGATGCTTGCTCGTAACAAGCTTAACTGTTCGTTTATAAGCGAAGACGGCCAAGACGTTACTTTCGATCTCTTGGAGAAGTTTGTGAGACCAAGGACAGGAGGAAAGCAGCGTTATTACAAATTCAAGGTTCGTTACCAAAGCGATGAATTCGGTGAAGAAGGCGAAGGAGAAATTCTACTAATCGTACCAAGAGATCCGCAACATGGCGTAAATGACAGAATGGATGGAAATCGTTCGACCAATTTGCATCCTTTCGATGCACCCGACGGCGTGTTTTTTACACAAGATGACGTCAATAACTTGACTCTCTGTTGCTGCGAGTGCTGTCACCGACAAGCTTGTCAGGGGTTGTCCAAGATATGTTGTAACGTCTTTCCACAGCACAGCACTGCTAATCAGTTCTTCACATCCCGGATGTTCTCGGCGTATCACTGTGAAGGGTACCGCGCATGCGTAGATGCCTATGCTGTTGGCTTTTTGAGAAATGGTGACAAGGAAAGGGAGCAAAATGATGTTAACATTGTGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000261 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01734 all species →	Patatin	Patatin-like phospholipase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002641 all species →	Domain	Patatin-like phospholipase domain	Interproscan
IPR016035 all species →	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10728 all species →	CYTOSOLIC PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046475 all species →	Biological Process	glycerophospholipid catabolic process	Interproscan
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1051.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.