Gene detail

Detailed information of evm.model.Ap3.1064 in Astrangia poculata

Genomic Location: Ap3:11703804...11717823
NR annotation: XP_020601741.1, RIMS-binding protein 2-like isoform X2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1064

atggctgaaggtgatatgggtgatctggaggattccaacctttcagcccgccctgaaatgaacaggcagatcactcaccacatcaggttattggtgagtatactgaatgtgcataatgctgagacagcaagcagtgaacagacgtcagcagggaacagcaacaaacccagcactgaggaggcggcactggacaacagatatctagagggtgattgcagtgaggtggatccagccatacttgaaaagctggctgtgtatatagcgagatacagttacgacccatggcagcactcgcccaatgagaatcctgagatggaacttgctttccaggctggggattatctgtatgtctttggagagatggatgaggatgggtactttttgggtgaactgatgagtggccaaagaggacttgtaccatccaactttgttgagaaagttgcagatgagagtgagatgaatatgatgatgaatggtacaggagaaggaattgatgaaattgaggacagcagtgatgaggaggaaacagacggtaaacttcaccgtgcgttacgcttgtcagtggaacacatacccgatagtggattacaagatattgaagaagtagaagaagaaggagtggaggaagaaatagaagaaaatcttgactcagaagatgaatttgatgaagaggacggttcaacagaagctgtattaaaccaagatggcgtgataagtgatgaaaacgacattgagcccctcagagttccatctcccaggcggctccatctcgaacgtcagtttactcagagcgtgctcctgagttggaaacccgctgacctgccagcagatcaagtgaaaggttacggtgtgtatgcaaacggagaactgcgacttatgatcaagggagcaggtaaaaccaaggcgcttctggaaggcattgaccccgaggagacgtatcgtatatctgtgagaaccataacaaccaatggagaagagtcttctgaccgttcagctgtgttgactgtcggcaaagatgccaacgttgcgccaagtcacgtgcacgtcacgtgcgtctctcccacgtcagccaagatcgtgtggtcaccaggcaacagctcgttcagtcacgagatccttttaaacggggcccttcacaggacggtgcgccctggcacgttccagcacacgatcacaaacctcgagccagaccagatgtataaggtccatgttcgtgctaaggatcccaagcgagttttggatcgtgacgatgaaccggatatcgagattgatcttttgacagcggaggcagaattcagaactgagccaggcggccttcctgacccacctttagacgtcgaagtcgtcccaggtcactcgaactcattggacgtgaactggattccagtaactattacggaaaagggaacttcaaacggagctcgcgtgacaggatataaagtttacatcaatggcttcccctgtactgaggtcacgtcacctactgcggattgcgtgacagctgtgtcatggatggtcgaacgcgcgagcaaaaagagtcacagcgatgttgttcgtgttgttgttagaactcaatcatgcgagggcgagtcggccgattctaatgaagtcgttctgcccatcgatatgtttaatttcaaggtgaaccagttgataaaacctaaaggagcagaaccgcctgctcaaagaacagacttatcgcgagaaggctttgaagaagatcatggcgttcacgaggaatcagcttacttggctaatggtgttttggaaaccgacgattcgggagaacgctccgacagtgtaaagcgttatagccgagatgaaaacggacaaccgcagttagttttagtagaagagactcctaaacaagcgaatgttgtcatggactatttgagcccactagcgcagcctcgaacgaagggagagcccgtcgtgtggaaatacgagcctggagatgaatcggaaactgccgagagtgtcacgaagagtgacgggagaggatccgaggacgaagatgacgaagaagtcgagatttgtatcccggacgtttccgaagaacaagcaccatctacagagaaggaggcggaagtgaaagtgaatgaggaagaggagggttatcaacaacttgaagaggataacaaagaagaagaagaagaagaagcggcacctgagattcctgaagacgaacaacagtttgacgagaaagatgttgtatttactaacgaagaaataccagaaatacacgagggagagcagaggagcagaaaggaaagtgacttgtcagtaacaagcgatatcgacatggatgagctggagcagtcactagaagacgcacaaagtattccacggacgagtcccgagggaaatgagagcgaagataaaaagccttacataagaccactggaatacgatgagagtgattttgaagatgattcaagcgaacaaactccactttctattatccaagaggaagacgaggaagatttgtctgaatcgataccttttccgagcaatttctcgcgatctcactcggcttccgaaggtttcgagagcgaagatgacgtcatggatttgctcgacgacgatcacggtcggggggagtcggcgggtcacggtatagacttcggaagcgttcgtagaatatcgcaaactgaaagaggtcctacgtggaattctaatcccgagggtgaaacatcggacttaggaaaatacttaacaaataatggcgaccagccgaatacggacgcttctctcgataatatccagcttgaagaaggccagggagaaatggttgaacgtggtggcctggaacccacatatagcgataccgaagctgaccgcggtggagtggagagaagttcgaatccacttgatgaatatgacgaggaaatagagcaagaggaagcaccccaccaccctgtgtatgacgaggctgccccatcagcagaagggcaggctccttctgttgaggggtacgtgggtgagatggccccagaggaacaagtgcgcgtgtttttagccctctatgattatgaccctgccagcatgtcccctaatcctgatgctgaagaggaagagctggcgtttaacgagggagacttgatcaaagtctatggcgataaggacgatgatggcttctactggggtgaattaaacggcagagcgggctacattccgttcaacatggtgtcagaagttgaactggaggacgaggaatccgacagcaatgttacgacgccttctatcaatgttacacaagaatcgacccagccccctgaagagagcccaagccaggaaccggaagtccttcccagttcctctgaaaacctgcttgacgaggtgatcctggaagaaggcgagtttgaagacccgagggaaagtgataactatcaactacctcccagacgaatggtagcgctgtttgattatgatccgcatacattgtcgcccaaccctgatagtgaggtggaattgaagtttagagttggagatgtgatttacgtgtatggagatatggatgaggatggcttctttacgggcgagttacgtggaattcgcggtttggttccgtcaaatttccttgaagatttgtctgatccagctgaagcgagtcaccatgacaccagtaacgacggctatgaatctcccacgggttcttcggacaagtacagctctctaaatggtactcatcacgtgacagaggacacgcccaaaaagaagaaaggaattttttccaaaggaaaacaaatgtttaaaaagattgcaaagggtcataactcgccacgaggaaacaactcaaagagatag

Transcript

evm.model.Ap3.1064

ATGGCTGAAGGTGATATGGGTGATCTGGAGGATTCCAACCTTTCAGCCCGCCCTGAAATGAACAGGCAGATCACTCACCACATCAGGTTATTGGTGAGTATACTGAATGTGCATAATGCTGAGACAGCAAGCAGTGAACAGACGTCAGCAGGGAACAGCAACAAACCCAGCACTGAGGAGGCGGCACTGGACAACAGATATCTAGAGGGTGATTGCAGTGAGGTGGATCCAGCCATACTTGAAAAGCTGGCTGTGTATATAGCGAGATACAGTTACGACCCATGGCAGCACTCGCCCAATGAGAATCCTGAGATGGAACTTGCTTTCCAGGCTGGGGATTATCTGTATGTCTTTGGAGAGATGGATGAGGATGGGTACTTTTTGGGTGAACTGATGAGTGGCCAAAGAGGACTTGTACCATCCAACTTTGTTGAGAAAGTTGCAGATGAGAGTGAGATGAATATGATGATGAATGGTACAGGAGAAGGAATTGATGAAATTGAGGACAGCAGTGATGAGGAGGAAACAGACGGTAAACTTCACCGTGCGTTACGCTTGTCAGTGGAACACATACCCGATAGTGGATTACAAGATATTGAAGAAGTAGAAGAAGAAGGAGTGGAGGAAGAAATAGAAGAAAATCTTGACTCAGAAGATGAATTTGATGAAGAGGACGGTTCAACAGAAGCTGTATTAAACCAAGATGGCGTGATAAGTGATGAAAACGACATTGAGCCCCTCAGAGTTCCATCTCCCAGGCGGCTCCATCTCGAACGTCAGTTTACTCAGAGCGTGCTCCTGAGTTGGAAACCCGCTGACCTGCCAGCAGATCAAGTGAAAGGTTACGGTGTGTATGCAAACGGAGAACTGCGACTTATGATCAAGGGAGCAGGTAAAACCAAGGCGCTTCTGGAAGGCATTGACCCCGAGGAGACGTATCGTATATCTGTGAGAACCATAACAACCAATGGAGAAGAGTCTTCTGACCGTTCAGCTGTGTTGACTGTCGGCAAAGATGCCAACGTTGCGCCAAGTCACGTGCACGTCACGTGCGTCTCTCCCACGTCAGCCAAGATCGTGTGGTCACCAGGCAACAGCTCGTTCAGTCACGAGATCCTTTTAAACGGGGCCCTTCACAGGACGGTGCGCCCTGGCACGTTCCAGCACACGATCACAAACCTCGAGCCAGACCAGATGTATAAGGTCCATGTTCGTGCTAAGGATCCCAAGCGAGTTTTGGATCGTGACGATGAACCGGATATCGAGATTGATCTTTTGACAGCGGAGGCAGAATTCAGAACTGAGCCAGGCGGCCTTCCTGACCCACCTTTAGACGTCGAAGTCGTCCCAGGTCACTCGAACTCATTGGACGTGAACTGGATTCCAGTAACTATTACGGAAAAGGGAACTTCAAACGGAGCTCGCGTGACAGGATATAAAGTTTACATCAATGGCTTCCCCTGTACTGAGGTCACGTCACCTACTGCGGATTGCGTGACAGCTGTGTCATGGATGGTCGAACGCGCGAGCAAAAAGAGTCACAGCGATGTTGTTCGTGTTGTTGTTAGAACTCAATCATGCGAGGGCGAGTCGGCCGATTCTAATGAAGTCGTTCTGCCCATCGATATGTTTAATTTCAAGGTGAACCAGTTGATAAAACCTAAAGGAGCAGAACCGCCTGCTCAAAGAACAGACTTATCGCGAGAAGGCTTTGAAGAAGATCATGGCGTTCACGAGGAATCAGCTTACTTGGCTAATGGTGTTTTGGAAACCGACGATTCGGGAGAACGCTCCGACAGTGTAAAGCGTTATAGCCGAGATGAAAACGGACAACCGCAGTTAGTTTTAGTAGAAGAGACTCCTAAACAAGCGAATGTTGTCATGGACTATTTGAGCCCACTAGCGCAGCCTCGAACGAAGGGAGAGCCCGTCGTGTGGAAATACGAGCCTGGAGATGAATCGGAAACTGCCGAGAGTGTCACGAAGAGTGACGGGAGAGGATCCGAGGACGAAGATGACGAAGAAGTCGAGATTTGTATCCCGGACGTTTCCGAAGAACAAGCACCATCTACAGAGAAGGAGGCGGAAGTGAAAGTGAATGAGGAAGAGGAGGGTTATCAACAACTTGAAGAGGATAACAAAGAAGAAGAAGAAGAAGAAGCGGCACCTGAGATTCCTGAAGACGAACAACAGTTTGACGAGAAAGATGTTGTATTTACTAACGAAGAAATACCAGAAATACACGAGGGAGAGCAGAGGAGCAGAAAGGAAAGTGACTTGTCAGTAACAAGCGATATCGACATGGATGAGCTGGAGCAGTCACTAGAAGACGCACAAAGTATTCCACGGACGAGTCCCGAGGGAAATGAGAGCGAAGATAAAAAGCCTTACATAAGACCACTGGAATACGATGAGAGTGATTTTGAAGATGATTCAAGCGAACAAACTCCACTTTCTATTATCCAAGAGGAAGACGAGGAAGATTTGTCTGAATCGATACCTTTTCCGAGCAATTTCTCGCGATCTCACTCGGCTTCCGAAGGTTTCGAGAGCGAAGATGACGTCATGGATTTGCTCGACGACGATCACGGTCGGGGGGAGTCGGCGGGTCACGGTATAGACTTCGGAAGCGTTCGTAGAATATCGCAAACTGAAAGAGGTCCTACGTGGAATTCTAATCCCGAGGGTGAAACATCGGACTTAGGAAAATACTTAACAAATAATGGCGACCAGCCGAATACGGACGCTTCTCTCGATAATATCCAGCTTGAAGAAGGCCAGGGAGAAATGGTTGAACGTGGTGGCCTGGAACCCACATATAGCGATACCGAAGCTGACCGCGGTGGAGTGGAGAGAAGTTCGAATCCACTTGATGAATATGACGAGGAAATAGAGCAAGAGGAAGCACCCCACCACCCTGTGTATGACGAGGCTGCCCCATCAGCAGAAGGGCAGGCTCCTTCTGTTGAGGGGTACGTGGGTGAGATGGCCCCAGAGGAACAAGTGCGCGTGTTTTTAGCCCTCTATGATTATGACCCTGCCAGCATGTCCCCTAATCCTGATGCTGAAGAGGAAGAGCTGGCGTTTAACGAGGGAGACTTGATCAAAGTCTATGGCGATAAGGACGATGATGGCTTCTACTGGGGTGAATTAAACGGCAGAGCGGGCTACATTCCGTTCAACATGGTGTCAGAAGTTGAACTGGAGGACGAGGAATCCGACAGCAATGTTACGACGCCTTCTATCAATGTTACACAAGAATCGACCCAGCCCCCTGAAGAGAGCCCAAGCCAGGAACCGGAAGTCCTTCCCAGTTCCTCTGAAAACCTGCTTGACGAGGTGATCCTGGAAGAAGGCGAGTTTGAAGACCCGAGGGAAAGTGATAACTATCAACTACCTCCCAGACGAATGGTAGCGCTGTTTGATTATGATCCGCATACATTGTCGCCCAACCCTGATAGTGAGGTGGAATTGAAGTTTAGAGTTGGAGATGTGATTTACGTGTATGGAGATATGGATGAGGATGGCTTCTTTACGGGCGAGTTACGTGGAATTCGCGGTTTGGTTCCGTCAAATTTCCTTGAAGATTTGTCTGATCCAGCTGAAGCGAGTCACCATGACACCAGTAACGACGGCTATGAATCTCCCACGGGTTCTTCGGACAAGTACAGCTCTCTAAATGGTACTCATCACGTGACAGAGGACACGCCCAAAAAGAAGAAAGGAATTTTTTCCAAAGGAAAACAAATGTTTAAAAAGATTGCAAAGGGTCATAACTCGCCACGAGGAAACAACTCAAAGAGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QFX1	RIMS-binding protein 2 OS=Gallus gallus OX=9031 GN=RIMBP2 PE=1 SV=1
Q9JIR0	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Tspoap1 PE=1 SV=2
Q7TNF8	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Mus musculus OX=10090 GN=Tspoap1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002289 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF07653 all species →	SH3_2	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035755 all species →	Domain	RIMS-binding protein, third SH3 domain	Interproscan
IPR035753 all species →	Domain	RIMS-binding protein, second SH3 domain	Interproscan
IPR040325 all species →	Family	RIMS-binding protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14234 all species →	RIM BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19922	TSPOAP1, BZRAP1, RIMBP1; peripheral-type benzodiazepine receptor-associated protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.