Gene detail

Detailed information of evm.model.Ap3.1071 in Astrangia poculata

Genomic Location: Ap3:11841417...11854707
NR annotation: XP_027046792.1, mediator of RNA polymerase II transcription subunit 16-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q566H4	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus laevis OX=8355 GN=med16 PE=2 SV=1
Q08D69	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus tropicalis OX=8364 GN=med16 PE=2 SV=1
Q6PGF3	Mediator of RNA polymerase II transcription subunit 16 OS=Mus musculus OX=10090 GN=Med16 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11635 all species →	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR021665 all species →	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan
IPR048338 all species →	Family	Mediator complex, subunit Med16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224 all species →	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14548	UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.