Gene detail

Detailed information of evm.model.Ap3.1092 in Astrangia poculata

Genomic Location: Ap3:12053774...12068516
NR annotation: XP_022780568.1, leucine-zipper-like transcriptional regulator 1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1092

atggctaccggaagttgtagccaccctcctcgcccgtttgaaattgatggagatttggaggccattgatacactgtcgcttgactttggacgtttcgaaagagtaaacagatggaaaggaatgccagaatgtgatgagtttgtgggagcaaggcgaagcaagcatactcttgttgcatggaatgatgctttatatgtgtttggtggtgacaatggaaagagaatgttgaatgacatgctgaggtttgacatcaaagacaattcgtggagcagagctgtaaccaaaggtgctccaccagcccctcggtaccaccattccgctgtgatttttggatccaacatgctggtgtttggaggattcaccggtgcagtaaatgttcctctgtctatatgtgtaactgctttgacatcaagtgccacagttctttgctatgcatgtgatctttactccaactccaaccttcaaaacaagaatgacttgtttgagtacaagttcaacactggacagtggactgagtggcggatggaaggaagattgcctcctgcaagatctgcccatggtgcagcgatctacaaaaacaacttgtggatctttgctggctatgatggtaacaaaagattagatgatctttggaccatttgcttgacagaccctaacccacgatggcaagaggtccaacagtcaggtgacagaccacctacatgttgcaactttcctgtagctgtagtcagggacagtatgtttgtattttctggtcaaagcggagccaagatcagtaatgacatgtttgagttcaattttctggaccaaaggtggactcgtattccgtcagcgcatttgttgcgtggctcgcccgcgccacctcagcggcgttacggtcacagtatgatagcgttcgatcggtacttgtatgtgttcggtggagttgcagataacacattaccttcagatctctacaggtactctcttgacgacaaatcatgggaggttgtacagccagcacaggacagtgaggttccaccagggcgcctctttcatgatgccgatgttattaacaatgagatgtacatatttggtggaactgttgataacaatgtacgaagcagcgagctctacagatttcagctggccagttatcctcgctgcacgctcagaggtgattacggtcgtttactggacagtaagcagttctgtgacatggtcttccttgttggcgaggaagaaactgattcgctcagcgcctttgttggcaggtccttgttgaaacacagctgtgcagccagatcgaatggagacagacctttggatcaagacgaggagaaaccggaagtgaagcttccggaagctgacgtccaatcttttgcggtcgcacttcgttacatgtatacagactgtatattccccttggtgaaagattgccaaggatcacaagagataagtctaatcatggacgtttataggttggcgctcaaggatttttgccttcgtttcatagttcgtgaagcgaactacaacaacatcatcatgagcaagaattttgagtctgtgccgcagaaacttatggtggaaatcatcagaagacggcaagtcccacaggcgagcgctcatattccaggagacaatcagtgtaggtcgacgcatccagagaagaccttgcagcaagacatgctggactttctccagggcgcgcgcggccaggacttccatgacatcacactgatggtggatggagagccaataggagcgcacaaagcggtcctggcttcaaggtgcagttactttgaggcaatgtttcgatcatttatgcccgagaacaacactgtaacgatcacaattggcgagacaattccttcgcgaggagctttcaactcccttctacactatatttatcacggagacgtgtctatgcctccagaggattcattatatcttttgtctgctccttacttctttggcttcacaaacaaccgacttcaggctttctgtaaacagaacttggaaatgaacgtttcatttgaaaacgtagtagagattctcgaagctgctcataggattggagcttcagacatgaagaaacatgctctggaccttgttgtcggccattttgtgaaggtggcgaaatctccgaaccttaagagactgagccgagacttgttgctggagattctggacgccatggtggactatctaaaagattcagacattgctgttaattcgtga

Transcript

evm.model.Ap3.1092

ATGGCTACCGGAAGTTGTAGCCACCCTCCTCGCCCGTTTGAAATTGATGGAGATTTGGAGGCCATTGATACACTGTCGCTTGACTTTGGACGTTTCGAAAGAGTAAACAGATGGAAAGGAATGCCAGAATGTGATGAGTTTGTGGGAGCAAGGCGAAGCAAGCATACTCTTGTTGCATGGAATGATGCTTTATATGTGTTTGGTGGTGACAATGGAAAGAGAATGTTGAATGACATGCTGAGGTTTGACATCAAAGACAATTCGTGGAGCAGAGCTGTAACCAAAGGTGCTCCACCAGCCCCTCGGTACCACCATTCCGCTGTGATTTTTGGATCCAACATGCTGGTGTTTGGAGGATTCACCGGTGCAGTAAATGTTCCTCTGTCTATATGTGTAACTGCTTTGACATCAAGTGCCACAGTTCTTTGCTATGCATGTGATCTTTACTCCAACTCCAACCTTCAAAACAAGAATGACTTGTTTGAGTACAAGTTCAACACTGGACAGTGGACTGAGTGGCGGATGGAAGGAAGATTGCCTCCTGCAAGATCTGCCCATGGTGCAGCGATCTACAAAAACAACTTGTGGATCTTTGCTGGCTATGATGGTAACAAAAGATTAGATGATCTTTGGACCATTTGCTTGACAGACCCTAACCCACGATGGCAAGAGGTCCAACAGTCAGGTGACAGACCACCTACATGTTGCAACTTTCCTGTAGCTGTAGTCAGGGACAGTATGTTTGTATTTTCTGGTCAAAGCGGAGCCAAGATCAGTAATGACATGTTTGAGTTCAATTTTCTGGACCAAAGGTGGACTCGTATTCCGTCAGCGCATTTGTTGCGTGGCTCGCCCGCGCCACCTCAGCGGCGTTACGGTCACAGTATGATAGCGTTCGATCGGTACTTGTATGTGTTCGGTGGAGTTGCAGATAACACATTACCTTCAGATCTCTACAGGTACTCTCTTGACGACAAATCATGGGAGGTTGTACAGCCAGCACAGGACAGTGAGGTTCCACCAGGGCGCCTCTTTCATGATGCCGATGTTATTAACAATGAGATGTACATATTTGGTGGAACTGTTGATAACAATGTACGAAGCAGCGAGCTCTACAGATTTCAGCTGGCCAGTTATCCTCGCTGCACGCTCAGAGGTGATTACGGTCGTTTACTGGACAGTAAGCAGTTCTGTGACATGGTCTTCCTTGTTGGCGAGGAAGAAACTGATTCGCTCAGCGCCTTTGTTGGCAGGTCCTTGTTGAAACACAGCTGTGCAGCCAGATCGAATGGAGACAGACCTTTGGATCAAGACGAGGAGAAACCGGAAGTGAAGCTTCCGGAAGCTGACGTCCAATCTTTTGCGGTCGCACTTCGTTACATGTATACAGACTGTATATTCCCCTTGGTGAAAGATTGCCAAGGATCACAAGAGATAAGTCTAATCATGGACGTTTATAGGTTGGCGCTCAAGGATTTTTGCCTTCGTTTCATAGTTCGTGAAGCGAACTACAACAACATCATCATGAGCAAGAATTTTGAGTCTGTGCCGCAGAAACTTATGGTGGAAATCATCAGAAGACGGCAAGTCCCACAGGCGAGCGCTCATATTCCAGGAGACAATCAGTGTAGGTCGACGCATCCAGAGAAGACCTTGCAGCAAGACATGCTGGACTTTCTCCAGGGCGCGCGCGGCCAGGACTTCCATGACATCACACTGATGGTGGATGGAGAGCCAATAGGAGCGCACAAAGCGGTCCTGGCTTCAAGGTGCAGTTACTTTGAGGCAATGTTTCGATCATTTATGCCCGAGAACAACACTGTAACGATCACAATTGGCGAGACAATTCCTTCGCGAGGAGCTTTCAACTCCCTTCTACACTATATTTATCACGGAGACGTGTCTATGCCTCCAGAGGATTCATTATATCTTTTGTCTGCTCCTTACTTCTTTGGCTTCACAAACAACCGACTTCAGGCTTTCTGTAAACAGAACTTGGAAATGAACGTTTCATTTGAAAACGTAGTAGAGATTCTCGAAGCTGCTCATAGGATTGGAGCTTCAGACATGAAGAAACATGCTCTGGACCTTGTTGTCGGCCATTTTGTGAAGGTGGCGAAATCTCCGAACCTTAAGAGACTGAGCCGAGACTTGTTGCTGGAGATTCTGGACGCCATGGTGGACTATCTAAAAGATTCAGACATTGCTGTTAATTCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R4Q7	Leucine-zipper-like transcriptional regulator 1 OS=Pongo abelii OX=9601 GN=LZTR1 PE=2 SV=1
Q8N653	Leucine-zipper-like transcriptional regulator 1 OS=Homo sapiens OX=9606 GN=LZTR1 PE=1 SV=2
Q9CQ33	Leucine-zipper-like transcriptional regulator 1 OS=Mus musculus OX=10090 GN=Lztr1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005448 (this species only)
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13964 all species →	Kelch_6	Kelch motif	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23330	LZTR1; leucine-zipper-like transcriptional regulator 1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.