Detailed information of evm.model.Ap3.1098 in Astrangia poculata

Genomic Location: Ap3:12123916...12125472
NR annotation: XP_020606012.1, lysosome membrane protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P27615Lysosome membrane protein 2 OS=Rattus norvegicus OX=10116 GN=Scarb2 PE=1 SV=2
O35114Lysosome membrane protein 2 OS=Mus musculus OX=10090 GN=Scarb2 PE=1 SV=3
Q14108Lysosome membrane protein 2 OS=Homo sapiens OX=9606 GN=SCARB2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001028 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01130
all species →		CD36CD36 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002159
all species →		FamilyCD36 familyInterproscan
IPR005428
all species →		FamilyCD36/scavenger receptor class B member 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11923
all species →		SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005044
all species →		Molecular Functionscavenger receptor activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12384SCARB2, LIMP2, CD36L2; lysosome membrane protein 2-Lysosomeko04142deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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