Gene detail

Detailed information of evm.model.Ap3.1122.1.5f15e44d in Astrangia poculata

Genomic Location: Ap3:12317004...12331286
NR annotation: KAJ7387080.1, GATOR complex protein depdc5 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1122.1.5f15e44d

atgacctttattattctctttattgcagcatttgaaaggcatcacattgatcgtaattttgaacgtaccggtcagacaaccatcattgtatcaccagggtcgggagtgtttgaagtggatagagaaatgaccagcatcacaaaacagcgattactggacagtggtgtttccatcgaccttgtgtgtctagctgaacagcccctgcacacggttccccttctgaagttctttaataagaccctacgtcatggagacgctgacttaggagatgactacaacataccacactggatgaaccacaatttttacacctcaccaaagagaagaaacaagacggaaaactctgtacctcgtataaaaattcccgatgttgtcttaagctctcttggaaaaaatggcgaatgcgaaaaaggagtatacgctagttttgcggatcattgcaagacagaactaggggacagtcagcttccagatttggtgaattatgctgaatacgacgccaaaatatttagaaatcctgtcacccagagtacactaaagggcttcccgccaagaggatcaggcttcagacgaatcagaagcgctcaggagatgcagcgaatggctaaatccatatcaagagatgaactcatgttccaaagggtttcgtcgcctccacgaggcgtctcttcgtttgaagacttggagatttcgtcgtcgtcaagctcgttcattagacgagatgcacctttcagagaaatggaaaccagcagaagccgtattttttcttcatctgtggagtgtacgtcccacggtattctcgcttcattatcggaaaacgttatccgtcatgacaccttccatgaaatcgtacgccctgtacctcagcggtttgctgttggcagcgcaggcgcaccacgcgccgtgaacaccgttcagtcgcggccccagagaaccttgataaatcctttcaagccaaacgagattccctgcaactggacatgtaacagacatcggtggtcacatgtttttcccaagggacctggcggagaggttctccatcgacactacgaaaagctgtcaccgactgaaagcgagactcatgtgaaacctgccgaaaagtcacgttatgtcgaggaagcagcccttgcagtcgtggccgctcgcaagagagagatctcagcttcccagagtgcttcagaagagcaagatttattcgacgagctgataggtagcgagggcagtgccgaagagacggacgaagaaaacatgttcgttaccgatatatcgcctcgcaatcgcggccatttcagcccaatttcccacaggatgcacacgtcgcagaacacgacaccccgacgccgcacccagctagcacggatcaatctgtaccgtggggtagaaacagtgccagacgaatatgattggacagcggccgtcaagacaagcgttgactggaaatcgctgacttgcccagcgctattgcctctgacgacagattattatccgaacaagaagacacttgattcagactatctggagtacaactataaactgtatattgaagaggaggaggattttaccgacgagaagaaaaacactgactggggaaaacaagagagcacacaagaggaagatgtacatggagcacatcgacgactgagtgcagagatgatattcatcgaacttgtatcacaacgaatacgaaagggttttcagttaatcacgccaaaggctaaaccagcgcctcccgagaggccccagtccatcgcggccataccagccaagtctgacgatcaagagtacttcctgagtagtggccggaactcacataagcttagtctgacgtcaccggaagtgacagtcactaagtatagaccacgccaccaaatgggctcccaacccatctactacagctatcggctttggatcccacagagaaaagtgtttgaaccaaaccaaggaagattcttacacgaagaaatggatagttacaattggaactatctggaccaacacatttgcggagatcctgaatttgatgagcttatcgagtctttaaattactggaaagctcgctttctcctgctgccgttttcgccgtttgcgcagcgtaaagttaaagacgaagggtggggagacaagaagaaaaaaagttcaccagaagacaatgccatggacggaattctgaagtttcttgaggtccttaatcgtataaaacgtattcaagctcagaaagtaccacaaacgcccaaggaaagaaaacaatccgaggtatctgtaccatctcgtcgcattagtaaacaacacgagcacaaaacagcccgacccctatcctgtgagttaacagtagccaaggagagtagctctacacctagtagtccgctgattcatagatcgcggtcgtcttcggcaacgggtgaggaattggccggcccggattctcgtgccagtccttctcgagaattagccagcgagcagccaaaaacaatcgacgagtcagcaacgaaaccggagaaagaaaagctcagtgtagaatcgccactggataatgtagctgaagccatgctggaacctggaaagggcttgattttcttaccagagttgaagggattgaaacctgccagcttccttagcgttgaggcgatctcgtggattacacagaacgtggatggagtcacttctaaggagcaagccattcaactttgccagaaaatgatcgaggcaggcttcatccagcatgcttcaacaagtgctaaacagaagttggtagaaggtttcatcatattctgtttcacgccgaagtcctcttgggcggagaaaacggaggatatactggacacctccaagttttccattccacaccgaagctcgatcgaagtggagcgctttgagttcgagtttttaaaagcctttcaaatcgaatggtttgaagtcgctgtttggccgcgccgaacaagtgaagagctcccagaattcttagcacccgatcgggtgattgaatcatttccagctggctctccttcccggaagcgcaaccgagcaagatcggcccgtcggagcccaggacgtttgcattcggatagcgactgcggctgtggtcctgcctacaagttcgtcacgctagacgccgatcctcatcataaaagccaacgaccggagacttgcactgttcgttaccatggcaactactgtcctcttaatgcgtttgagatcgaactgcactggatagcagcgactgggtgcattgtgaacgacatggtaggggaacagaaacttgcaagtacaattttgagacgaatcgaaacgacctcaatagatgttaacctagtccggaaacaacgccgaaggacatctgaattgataagcatctttcactga

Transcript

evm.model.Ap3.1122.1.5f15e44d

ATGACCTTTATTATTCTCTTTATTGCAGCATTTGAAAGGCATCACATTGATCGTAATTTTGAACGTACCGGTCAGACAACCATCATTGTATCACCAGGGTCGGGAGTGTTTGAAGTGGATAGAGAAATGACCAGCATCACAAAACAGCGATTACTGGACAGTGGTGTTTCCATCGACCTTGTGTGTCTAGCTGAACAGCCCCTGCACACGGTTCCCCTTCTGAAGTTCTTTAATAAGACCCTACGTCATGGAGACGCTGACTTAGGAGATGACTACAACATACCACACTGGATGAACCACAATTTTTACACCTCACCAAAGAGAAGAAACAAGACGGAAAACTCTGTACCTCGTATAAAAATTCCCGATGTTGTCTTAAGCTCTCTTGGAAAAAATGGCGAATGCGAAAAAGGAGTATACGCTAGTTTTGCGGATCATTGCAAGACAGAACTAGGGGACAGTCAGCTTCCAGATTTGGTGAATTATGCTGAATACGACGCCAAAATATTTAGAAATCCTGTCACCCAGAGTACACTAAAGGGCTTCCCGCCAAGAGGATCAGGCTTCAGACGAATCAGAAGCGCTCAGGAGATGCAGCGAATGGCTAAATCCATATCAAGAGATGAACTCATGTTCCAAAGGGTTTCGTCGCCTCCACGAGGCGTCTCTTCGTTTGAAGACTTGGAGATTTCGTCGTCGTCAAGCTCGTTCATTAGACGAGATGCACCTTTCAGAGAAATGGAAACCAGCAGAAGCCGTATTTTTTCTTCATCTGTGGAGTGTACGTCCCACGGTATTCTCGCTTCATTATCGGAAAACGTTATCCGTCATGACACCTTCCATGAAATCGTACGCCCTGTACCTCAGCGGTTTGCTGTTGGCAGCGCAGGCGCACCACGCGCCGTGAACACCGTTCAGTCGCGGCCCCAGAGAACCTTGATAAATCCTTTCAAGCCAAACGAGATTCCCTGCAACTGGACATGTAACAGACATCGGTGGTCACATGTTTTTCCCAAGGGACCTGGCGGAGAGGTTCTCCATCGACACTACGAAAAGCTGTCACCGACTGAAAGCGAGACTCATGTGAAACCTGCCGAAAAGTCACGTTATGTCGAGGAAGCAGCCCTTGCAGTCGTGGCCGCTCGCAAGAGAGAGATCTCAGCTTCCCAGAGTGCTTCAGAAGAGCAAGATTTATTCGACGAGCTGATAGGTAGCGAGGGCAGTGCCGAAGAGACGGACGAAGAAAACATGTTCGTTACCGATATATCGCCTCGCAATCGCGGCCATTTCAGCCCAATTTCCCACAGGATGCACACGTCGCAGAACACGACACCCCGACGCCGCACCCAGCTAGCACGGATCAATCTGTACCGTGGGGTAGAAACAGTGCCAGACGAATATGATTGGACAGCGGCCGTCAAGACAAGCGTTGACTGGAAATCGCTGACTTGCCCAGCGCTATTGCCTCTGACGACAGATTATTATCCGAACAAGAAGACACTTGATTCAGACTATCTGGAGTACAACTATAAACTGTATATTGAAGAGGAGGAGGATTTTACCGACGAGAAGAAAAACACTGACTGGGGAAAACAAGAGAGCACACAAGAGGAAGATGTACATGGAGCACATCGACGACTGAGTGCAGAGATGATATTCATCGAACTTGTATCACAACGAATACGAAAGGGTTTTCAGTTAATCACGCCAAAGGCTAAACCAGCGCCTCCCGAGAGGCCCCAGTCCATCGCGGCCATACCAGCCAAGTCTGACGATCAAGAGTACTTCCTGAGTAGTGGCCGGAACTCACATAAGCTTAGTCTGACGTCACCGGAAGTGACAGTCACTAAGTATAGACCACGCCACCAAATGGGCTCCCAACCCATCTACTACAGCTATCGGCTTTGGATCCCACAGAGAAAAGTGTTTGAACCAAACCAAGGAAGATTCTTACACGAAGAAATGGATAGTTACAATTGGAACTATCTGGACCAACACATTTGCGGAGATCCTGAATTTGATGAGCTTATCGAGTCTTTAAATTACTGGAAAGCTCGCTTTCTCCTGCTGCCGTTTTCGCCGTTTGCGCAGCGTAAAGTTAAAGACGAAGGGTGGGGAGACAAGAAGAAAAAAAGTTCACCAGAAGACAATGCCATGGACGGAATTCTGAAGTTTCTTGAGGTCCTTAATCGTATAAAACGTATTCAAGCTCAGAAAGTACCACAAACGCCCAAGGAAAGAAAACAATCCGAGGTATCTGTACCATCTCGTCGCATTAGTAAACAACACGAGCACAAAACAGCCCGACCCCTATCCTGTGAGTTAACAGTAGCCAAGGAGAGTAGCTCTACACCTAGTAGTCCGCTGATTCATAGATCGCGGTCGTCTTCGGCAACGGGTGAGGAATTGGCCGGCCCGGATTCTCGTGCCAGTCCTTCTCGAGAATTAGCCAGCGAGCAGCCAAAAACAATCGACGAGTCAGCAACGAAACCGGAGAAAGAAAAGCTCAGTGTAGAATCGCCACTGGATAATGTAGCTGAAGCCATGCTGGAACCTGGAAAGGGCTTGATTTTCTTACCAGAGTTGAAGGGATTGAAACCTGCCAGCTTCCTTAGCGTTGAGGCGATCTCGTGGATTACACAGAACGTGGATGGAGTCACTTCTAAGGAGCAAGCCATTCAACTTTGCCAGAAAATGATCGAGGCAGGCTTCATCCAGCATGCTTCAACAAGTGCTAAACAGAAGTTGGTAGAAGGTTTCATCATATTCTGTTTCACGCCGAAGTCCTCTTGGGCGGAGAAAACGGAGGATATACTGGACACCTCCAAGTTTTCCATTCCACACCGAAGCTCGATCGAAGTGGAGCGCTTTGAGTTCGAGTTTTTAAAAGCCTTTCAAATCGAATGGTTTGAAGTCGCTGTTTGGCCGCGCCGAACAAGTGAAGAGCTCCCAGAATTCTTAGCACCCGATCGGGTGATTGAATCATTTCCAGCTGGCTCTCCTTCCCGGAAGCGCAACCGAGCAAGATCGGCCCGTCGGAGCCCAGGACGTTTGCATTCGGATAGCGACTGCGGCTGTGGTCCTGCCTACAAGTTCGTCACGCTAGACGCCGATCCTCATCATAAAAGCCAACGACCGGAGACTTGCACTGTTCGTTACCATGGCAACTACTGTCCTCTTAATGCGTTTGAGATCGAACTGCACTGGATAGCAGCGACTGGGTGCATTGTGAACGACATGGTAGGGGAACAGAAACTTGCAAGTACAATTTTGAGACGAATCGAAACGACCTCAATAGATGTTAACCTAGTCCGGAAACAACGCCGAAGGACATCTGAATTGATAAGCATCTTTCACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61460	GATOR1 complex protein DEPDC5 OS=Mus musculus OX=10090 GN=Depdc5 PE=1 SV=2
O75140	GATOR1 complex protein DEPDC5 OS=Homo sapiens OX=9606 GN=DEPDC5 PE=1 SV=2
Q9W0E3	GATOR complex protein Iml1 OS=Drosophila melanogaster OX=7227 GN=Iml1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19418 all species →	DEPDC5_CTD	DEPDC5 protein C-terminal region	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF12257 all species →	IML1	Vacuolar membrane-associated protein Iml1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045838 all species →	Domain	DEPDC5, C-terminal	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR048255 all species →	Domain	Vacuolar membrane-associated protein Iml1, N-terminal domain	Interproscan
IPR027244 all species →	Family	Vacuolar membrane-associated protein Iml1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13179 all species →	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010508 all species →	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130 all species →	Cellular Component	GATOR1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1122.1.5f15e44d.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.