Genomic Location: Ap3:13584704...13587226
NR annotation: XP_020627581.1, alpha-ketoglutarate-dependent dioxygenase alkB homolog 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.1233 |
| Transcript |
| evm.model.Ap3.1233 |
| Protein |
| evm.model.Ap3.1233 |
| UniProt accession | Description |
|---|---|
| Q9NXW9 | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo sapiens OX=9606 GN=ALKBH4 PE=1 SV=1 |
| Q9D8F1 | Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Mus musculus OX=10090 GN=Alkbh4 PE=1 SV=1 |
| Q8MNT9 | DNA N6-methyl adenine demethylase OS=Caenorhabditis elegans OX=6239 GN=nmad-1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008661 (this species only) |
evm.model.Ap3.1233. This gene does have a gene model — the search simply returned no hit.| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032857 all species → | Family | Alpha-ketoglutarate-dependent dioxygenase alkB homologue 4 | Interproscan |
| IPR037151 all species → | Homologous_superfamily | Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12463 all species → | OXYGENASE-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0032451 all species → | Molecular Function | demethylase activity | Interproscan |
| GO:0070988 all species → | Biological Process | demethylation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10766 | ALKBH4; DNA N6-methyl adenine demethylase | EC:1.14.11.51 | Enzymes with EC numbers | - | deepkoala |
Transcript abundance of evm.model.Ap3.1233 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
