Detailed information of evm.model.Ap3.1272 in Astrangia poculata

Genomic Location: Ap3:14206738...14207745
NR annotation: RUS90577.1, hypothetical protein EGW08_001665 [Elysia chlorotica]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O00370LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1
Q03278Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000011 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20049
all species →		DUF6451Domain of unknown function (DUF6451)DomainInterproscan
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045609
all species →		DomainDomain of unknown function DUF6451Interproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47027
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap3.1272. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1272.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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