Genomic Location: Ap3:14342937...14434884
NR annotation: KAJ7378733.1, Protein strawberry notch 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.1276_evm.model.Ap3.1281.1.5f168c25 |
| Transcript |
| evm.model.Ap3.1276_evm.model.Ap3.1281.1.5f168c25 |
| Protein |
| evm.model.Ap3.1276_evm.model.Ap3.1281.1.5f168c25 |
| UniProt accession | Description |
|---|---|
| A3KN83 | Protein strawberry notch homolog 1 OS=Homo sapiens OX=9606 GN=SBNO1 PE=1 SV=1 |
| Q689Z5 | Protein strawberry notch homolog 1 OS=Mus musculus OX=10090 GN=Sbno1 PE=1 SV=2 |
| Q5F371 | Protein strawberry notch homolog 1 OS=Gallus gallus OX=9031 GN=SBNO1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000611 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13871 all species → | Helicase_C_4 | C-terminal domain on Strawberry notch homologue | Domain | Interproscan |
| PF13872 all species → | AAA_34 | P-loop containing NTP hydrolase pore-1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026937 all species → | Domain | Strawberry notch, helicase C domain | Interproscan |
| IPR039187 all species → | Domain | Strawberry notch, AAA domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR026741 all species → | Family | Protein strawberry notch | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12706 all species → | STRAWBERRY NOTCH-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0031490 all species → | Molecular Function | chromatin DNA binding | Interproscan |
| GO:0042393 all species → | Molecular Function | histone binding | Interproscan |
evm.model.Ap3.1276_evm.model.Ap3.1281.1.5f168c25.Transcript abundance of evm.model.Ap3.1276_evm.model.Ap3.1281.1.5f168c25 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
