Detailed information of evm.model.Ap3.1313 in Astrangia poculata

Genomic Location: Ap3:14918830...14922394
NR annotation: CAH3021013.1, unnamed protein product, partial [Porites evermanni]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NHS9Spermatogenesis-associated protein 22 OS=Homo sapiens OX=9606 GN=SPATA22 PE=1 SV=2
Q95JQ1Spermatogenesis-associated protein 22 OS=Macaca fascicularis OX=9541 GN=SPATA22 PE=2 SV=1
Q2TA20Spermatogenesis-associated protein 22 OS=Bos taurus OX=9913 GN=SPATA22 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009088 (this species only)

 Pfam domain
No Pfam domain signature was detected for evm.model.Ap3.1313. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR033536
all species →		FamilySpermatogenesis-associated protein 22Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR35258
all species →		SPERMATOGENESIS-ASSOCIATED PROTEIN 22Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000711
all species →		Biological Processmeiotic DNA repair synthesisInterproscan
GO:0007129
all species →		Biological Processhomologous chromosome pairing at meiosisInterproscan
GO:0007276
all species →		Biological Processgamete generationInterproscan
GO:0051445
all species →		Biological Processregulation of meiotic cell cycleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22421SPATA22; spermatogenesis-associated protein 22-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.1313 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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