Gene detail

Detailed information of evm.model.Ap3.1314 in Astrangia poculata

Genomic Location: Ap3:14922811...14928901
NR annotation: XP_020616731.1, transcription elongation factor SPT4-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DGQ0	Transcription elongation factor SPT4 OS=Danio rerio OX=7955 GN=supt4h1 PE=3 SV=1
P63271	Transcription elongation factor SPT4-A OS=Mus musculus OX=10090 GN=Supt4h1a PE=2 SV=1
Q3SYX6	Transcription elongation factor SPT4 OS=Bos taurus OX=9913 GN=SUPT4H1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009629 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06093 all species →	Spt4	Spt4/RpoE2 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022800 all species →	Domain	Spt4/RpoE2 zinc finger	Interproscan
IPR029040 all species →	Homologous_superfamily	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	Interproscan
IPR009287 all species →	Family	Transcription initiation Spt4	Interproscan
IPR038510 all species →	Homologous_superfamily	Spt4 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12882 all species →	SUPPRESSOR OF TY 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0140673 all species →	Biological Process	transcription elongation-coupled chromatin remodeling	Interproscan
GO:0000993 all species →	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0032044 all species →	Cellular Component	DSIF complex	Interproscan
GO:0034243 all species →	Biological Process	regulation of transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15171	SUPT4H1, SPT4; transcription elongation factor SPT4	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.