Gene detail

Detailed information of evm.model.Ap3.1339 in Astrangia poculata

Genomic Location: Ap3:15238502...15248313
NR annotation: XP_020601846.1, uncharacterized protein LOC110040927 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1339

atgaggggctgtagtgcaggctacaggggaaaatgcatggcaaaaataactttgttttctcacgaaatgaacgcatcagaagctgttacgtgtgtttgtacccgtgcattattaagtgacatagaccttttgaggtatgaggaccaccaacaacaagaacgaaccatagaagtcattgttgctgaggatgccaatgtcatctgtaattcaaccagtccttgtgaaatgagagctctcaccaagccagcctaccttcatgatgttgatgaaccagatgacgaaatgttgcaagagctagaaatgatgaagacaatgggtttgccaacttccttctcaaagccttcctttgatttggactccgagcaagagcttgtcccatgcaaggatgtcaaaaaacgaaacaagataaagaaaactaaacagaatgcctcagcaagttcaaagcaaacgcccgagtgtacaaaaacgaacagtgtaatgtgtgagacagctattccaattaaccaatatgcagctgaacctgccagcctttcttcaaagttagaattcctcagcgatggtacgtatgtttgtttgccatctgaaagtgatgaaaatcacagagaatgtaggactaaaccttcgggagaactatttgacaagacactggaacaagttataaatgggtcagaaattcaagtaaacggactcgctacttcccgaacagtctctgcgttttgggtacatacatttgattctcataaaagtgagcataccgagctgaacagtgaggcaacctggagttcttttataagcccggcaagccggggtgaggaaaatgtgaagcaacaatgtgcatctgattttgataccagaagggatgacatcattaaacacttccaaaaacaagatgtaaacgcaaaagtaaagtttgaaagccagatttctgaaaatcaagacacagatttccagaatgtttacacaagtaactctgaagatagtgaaaatctttcaacagaagtagaactccatgatggactggaaagtcttgctcttgataacaatggtgaaagggagatcaatcttgccactggtcagaatgttagccatgacaagggttgggaagactattggaatatatacggttattccttggtttgggaaagctggaaaaacctctaccctcagtttgctggtgttcccagagatctcgacgctcaaaggacttttgaaaccgatgccggaagcgttctcggtttttcgctcgagaataatttggatgaatctggagaattaatctgtgatcctgtagttgagacaaaatcctcatttaaaagagaagaaattctgttatcagaagtcgagtccggcaacgataaggaggaacaagcattggatgataaagatcacatgttagacagtgaattttcacgtgatgtcgttagtgaaaaaaggttcaacactcgaaaaacaacttctgttttaaacgaatttaatactgaagtagaccaaggaacacacaagatctcagaagcctcaaaacaggaagctgcactggtaaaaaaagaactcgaggggcgtcacaaagaggaaattctttgtgacttccagcatgtagatgcactggacactgcatgtagtgagagatcatcatcaagttctaaatgtgatgccataatgacagagcaagtgaatatgttctggaaccgcaattactgggaagtatattggtattactatgaacagtacaactactggcacagccagggctatatttttgatggccatttagataacacaagtggcaccagacgctctgatacagactatgaagcacaccatgttgttgtttcatacggatcaggaaacaagccaacgaagaaaaagaagaagggaagacaaagtaacaatatgcaaaacgcaggaacatcgatgagcatcgtcctgcaaccacgtggagctaccagtggaaagagtgaatcgtgcgatggaaatgaaccacctccagaagaggcatgcaaaaagttaaaaagagctcacgagttggacgtggaggaacagaattctttagagagagcatatgagctgatgggtttcaaggtctcacgcaaagtgccagttgaaaactccagctatgctgaccagcccaggttctctagtgcaaaggtcacacttcgcttagaagacctcgaatccgagaataagtttctcaacatccaccaaatatgtaaagttccccggttaaaaggagtacatctcagatttgaagatgacgaagaagaacaagaagataaaatacgctgttcaactcaagaaggtagaaatacaacaacgcatttcgctccggaggaattagtggatgagtctgaagagcccaggacacttcacatggtcaaagaatttttgactgagacgggaagcagcttggattctagcatttgtagtgaatcaaagccagatagtaagaactaccaagaatccattgaaaacgaggcgttacaacatcggggatataaagcatcagacagcccttactcttcgagtggtatccagacagttgcattgaaacaggaggtcatcatagtagcaaatccccaagaagaccctgacattgctaagtactgggctcaaaggtaccgcttattttcgcgatttgacgacggaatcaaaatggacaaagaaggatggttctctgtgacaccggagcgcatagcaaagcatattgcagaaagatgccgttgcgatttaattgttgatgctttctgtggcgtcggtggaaacgcaattcaatttgctttcacgtgcgaacgtgtgatagcaattgatatcgacccgatgaaggtaactctcgcgcatcataatgcgactgtttatggagttgaagatcgtattgaattcattgttggagactacatgaagttaataccaagcttgaaggctgatgttgtgtttttgagtccaccgtggggtggaccgaactatgttagtgcagaagtgtttgacataaaaactatgattacactggatggcttccacctttttaaagaaaccaaaacgataacagagaacattgcttattttatgcctcgcaatgtagatgtggaacagttgtcatttcttgctgctccagatggtaaggtggaaattgagcagaatttccttaacaagaagcttaagacagtcacggcttattatggaggactagtggacgtctaa

Transcript

evm.model.Ap3.1339

ATGAGGGGCTGTAGTGCAGGCTACAGGGGAAAATGCATGGCAAAAATAACTTTGTTTTCTCACGAAATGAACGCATCAGAAGCTGTTACGTGTGTTTGTACCCGTGCATTATTAAGTGACATAGACCTTTTGAGGTATGAGGACCACCAACAACAAGAACGAACCATAGAAGTCATTGTTGCTGAGGATGCCAATGTCATCTGTAATTCAACCAGTCCTTGTGAAATGAGAGCTCTCACCAAGCCAGCCTACCTTCATGATGTTGATGAACCAGATGACGAAATGTTGCAAGAGCTAGAAATGATGAAGACAATGGGTTTGCCAACTTCCTTCTCAAAGCCTTCCTTTGATTTGGACTCCGAGCAAGAGCTTGTCCCATGCAAGGATGTCAAAAAACGAAACAAGATAAAGAAAACTAAACAGAATGCCTCAGCAAGTTCAAAGCAAACGCCCGAGTGTACAAAAACGAACAGTGTAATGTGTGAGACAGCTATTCCAATTAACCAATATGCAGCTGAACCTGCCAGCCTTTCTTCAAAGTTAGAATTCCTCAGCGATGGTACGTATGTTTGTTTGCCATCTGAAAGTGATGAAAATCACAGAGAATGTAGGACTAAACCTTCGGGAGAACTATTTGACAAGACACTGGAACAAGTTATAAATGGGTCAGAAATTCAAGTAAACGGACTCGCTACTTCCCGAACAGTCTCTGCGTTTTGGGTACATACATTTGATTCTCATAAAAGTGAGCATACCGAGCTGAACAGTGAGGCAACCTGGAGTTCTTTTATAAGCCCGGCAAGCCGGGGTGAGGAAAATGTGAAGCAACAATGTGCATCTGATTTTGATACCAGAAGGGATGACATCATTAAACACTTCCAAAAACAAGATGTAAACGCAAAAGTAAAGTTTGAAAGCCAGATTTCTGAAAATCAAGACACAGATTTCCAGAATGTTTACACAAGTAACTCTGAAGATAGTGAAAATCTTTCAACAGAAGTAGAACTCCATGATGGACTGGAAAGTCTTGCTCTTGATAACAATGGTGAAAGGGAGATCAATCTTGCCACTGGTCAGAATGTTAGCCATGACAAGGGTTGGGAAGACTATTGGAATATATACGGTTATTCCTTGGTTTGGGAAAGCTGGAAAAACCTCTACCCTCAGTTTGCTGGTGTTCCCAGAGATCTCGACGCTCAAAGGACTTTTGAAACCGATGCCGGAAGCGTTCTCGGTTTTTCGCTCGAGAATAATTTGGATGAATCTGGAGAATTAATCTGTGATCCTGTAGTTGAGACAAAATCCTCATTTAAAAGAGAAGAAATTCTGTTATCAGAAGTCGAGTCCGGCAACGATAAGGAGGAACAAGCATTGGATGATAAAGATCACATGTTAGACAGTGAATTTTCACGTGATGTCGTTAGTGAAAAAAGGTTCAACACTCGAAAAACAACTTCTGTTTTAAACGAATTTAATACTGAAGTAGACCAAGGAACACACAAGATCTCAGAAGCCTCAAAACAGGAAGCTGCACTGGTAAAAAAAGAACTCGAGGGGCGTCACAAAGAGGAAATTCTTTGTGACTTCCAGCATGTAGATGCACTGGACACTGCATGTAGTGAGAGATCATCATCAAGTTCTAAATGTGATGCCATAATGACAGAGCAAGTGAATATGTTCTGGAACCGCAATTACTGGGAAGTATATTGGTATTACTATGAACAGTACAACTACTGGCACAGCCAGGGCTATATTTTTGATGGCCATTTAGATAACACAAGTGGCACCAGACGCTCTGATACAGACTATGAAGCACACCATGTTGTTGTTTCATACGGATCAGGAAACAAGCCAACGAAGAAAAAGAAGAAGGGAAGACAAAGTAACAATATGCAAAACGCAGGAACATCGATGAGCATCGTCCTGCAACCACGTGGAGCTACCAGTGGAAAGAGTGAATCGTGCGATGGAAATGAACCACCTCCAGAAGAGGCATGCAAAAAGTTAAAAAGAGCTCACGAGTTGGACGTGGAGGAACAGAATTCTTTAGAGAGAGCATATGAGCTGATGGGTTTCAAGGTCTCACGCAAAGTGCCAGTTGAAAACTCCAGCTATGCTGACCAGCCCAGGTTCTCTAGTGCAAAGGTCACACTTCGCTTAGAAGACCTCGAATCCGAGAATAAGTTTCTCAACATCCACCAAATATGTAAAGTTCCCCGGTTAAAAGGAGTACATCTCAGATTTGAAGATGACGAAGAAGAACAAGAAGATAAAATACGCTGTTCAACTCAAGAAGGTAGAAATACAACAACGCATTTCGCTCCGGAGGAATTAGTGGATGAGTCTGAAGAGCCCAGGACACTTCACATGGTCAAAGAATTTTTGACTGAGACGGGAAGCAGCTTGGATTCTAGCATTTGTAGTGAATCAAAGCCAGATAGTAAGAACTACCAAGAATCCATTGAAAACGAGGCGTTACAACATCGGGGATATAAAGCATCAGACAGCCCTTACTCTTCGAGTGGTATCCAGACAGTTGCATTGAAACAGGAGGTCATCATAGTAGCAAATCCCCAAGAAGACCCTGACATTGCTAAGTACTGGGCTCAAAGGTACCGCTTATTTTCGCGATTTGACGACGGAATCAAAATGGACAAAGAAGGATGGTTCTCTGTGACACCGGAGCGCATAGCAAAGCATATTGCAGAAAGATGCCGTTGCGATTTAATTGTTGATGCTTTCTGTGGCGTCGGTGGAAACGCAATTCAATTTGCTTTCACGTGCGAACGTGTGATAGCAATTGATATCGACCCGATGAAGGTAACTCTCGCGCATCATAATGCGACTGTTTATGGAGTTGAAGATCGTATTGAATTCATTGTTGGAGACTACATGAAGTTAATACCAAGCTTGAAGGCTGATGTTGTGTTTTTGAGTCCACCGTGGGGTGGACCGAACTATGTTAGTGCAGAAGTGTTTGACATAAAAACTATGATTACACTGGATGGCTTCCACCTTTTTAAAGAAACCAAAACGATAACAGAGAACATTGCTTATTTTATGCCTCGCAATGTAGATGTGGAACAGTTGTCATTTCTTGCTGCTCCAGATGGTAAGGTGGAAATTGAGCAGAATTTCCTTAACAAGAAGCTTAAGACAGTCACGGCTTATTATGGAGGACTAGTGGACGTCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96RS0	Trimethylguanosine synthase OS=Homo sapiens OX=9606 GN=TGS1 PE=1 SV=3
P85107	Trimethylguanosine synthase OS=Rattus norvegicus OX=10116 GN=Tgs1 PE=1 SV=1
Q923W1	Trimethylguanosine synthase OS=Mus musculus OX=10090 GN=Tgs1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006112 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09445 all species →	Methyltransf_15	RNA cap guanine-N2 methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019012 all species →	Family	RNA cap guanine-N2 methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14741 all species →	S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001510 all species →	Biological Process	RNA methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0036261 all species →	Biological Process	7-methylguanosine cap hypermethylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0071164 all species →	Molecular Function	RNA cap trimethylguanosine synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14292	TGS1; trimethylguanosine synthase	EC:2.1.1.-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.