Gene detail

Detailed information of evm.model.Ap3.1380 in Astrangia poculata

Genomic Location: Ap3:15771549...15785587
NR annotation: XP_027047504.1, mediator of RNA polymerase II transcription subunit 15-like isoform X2 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924H2	Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q96RN5	Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002801 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21538 all species →	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan
PF09606 all species →	Med15	ARC105/Med15 mediator subunit N-terminal KIX domain	Domain	Interproscan
PF21539 all species →	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048385 all species →	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan
IPR036529 all species →	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR019087 all species →	Domain	Mediator of RNA polymerase II transcription subunit 15, N-terminal	Interproscan
IPR048386 all species →	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31804 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15157	MED15; mediator of RNA polymerase II transcription subunit 15	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.