Genomic Location: Ap3:15809435...15843513
NR annotation: XP_020607571.1, mediator of RNA polymerase II transcription subunit 23-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap3.1385 |
| Transcript |
| evm.model.Ap3.1385 |
| Protein |
| evm.model.Ap3.1385 |
| UniProt accession | Description |
|---|---|
| Q6P423 | Mediator of RNA polymerase II transcription subunit 23 OS=Xenopus laevis OX=8355 GN=med23 PE=2 SV=1 |
| Q9ULK4 | Mediator of RNA polymerase II transcription subunit 23 OS=Homo sapiens OX=9606 GN=MED23 PE=1 SV=2 |
| Q5RIW8 | Mediator of RNA polymerase II transcription subunit 23 OS=Danio rerio OX=7955 GN=med23 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003031 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF11573 all species → | Med23 | Mediator complex subunit 23 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR021629 all species → | Family | Mediator complex, subunit Med23 | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12691 all species → | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005667 all species → | Cellular Component | transcription regulator complex | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0010628 all species → | Biological Process | positive regulation of gene expression | Interproscan |
| GO:0016592 all species → | Cellular Component | mediator complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15166 | MED23; mediator of RNA polymerase II transcription subunit 23 | - | Transcription machinery | ko03021 | deepkoala |
Transcript abundance of evm.model.Ap3.1385 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
