Gene detail

Detailed information of evm.model.Ap3.1395.1.5f15e4eb in Astrangia poculata

Genomic Location: Ap3:15939853...15961024
NR annotation: XP_020621207.1, lysine-specific demethylase 2B-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1395.1.5f15e4eb

atggatggggaatatgaagtggagcgcagattgagaaagcagaaccggaggaattacaactatgatgcggatgatgttattgaaggaaaacgcacgtttagcgtggaagaaaagctaaacagtacgaaatttgctggtggagattttgtgaagactttcagcggtgatgaatttaccctaaagtttatacaagaaaacggctttacctcgccggttataattaaaagccccgaaggactagatatgcgggttcctcgtgatgactttagtgttgaagatgtaaagaattttgttggagctcggcgaatggtggatgtaattgatgtgaacacacaacaagccctagaaatgactttacaacaatgggtaaaatatttcacaagcgaggagagagatgaaatttacaatgtaataagcttggaatttagccacacgaaactggaggacctggtcgaaccgccagaagcggttcgaataatggattgggtgaacgttgtttggccgcagcatcttattgaacaacagcgagattccacaaactctctggcagatatgaagtacccgaaagtaagaaaatacgtgttgatgagtgtaggaggctgttacaccgactttcatatcgactttggtggcacgtctgtgtggtaccacatcatgaggggaagaaaggtcttctggctgatcccaccgaccgaaaagaatcttaatctgtacgagcagtgggttttgtctggaaagcaacagaacgttttctttggtgatcaggtcgagaagtgctgccggacttatctggaagaaggagatacattcttgattcctacagggtggatccatgctgtttttaccccagatgactcgcttgtgtttggtggaaatttcgtgcacagttttaacatcccgggacaaattaaaatcagtaagatcgaggacaatactaaggtccctctcaagtttcgctatccgtttttggcgcaaattatgtggtacgccgctgacaagtatgttcggctgttggagcaaaatagaaaagaactaggactgagcactaaaccaaaaacagatcgatccaaacaggatacaaccacatctaagaaaaaagacgacgttgctacccctaaagggaaatccgcgaacaaacgaggcgccaaaagtgatgtacaagaaaatgaagaaaaaaccagcgcttctgtgcaagaagagaacacggaagaagacccaacggacacacccggccgaaggaggtccagtcgagttgcacgaaacgaggcgattgcacggcaagctcaggaacacgcagagaaagacaatgctggtaaaaacgtcatcaaatgtaaagaagaaaagacagacacggaggaacttagcagaaagaagggaactcctaagaaacaagctaaggggagcgaaggcaaggcagaagtgaatggtgaaagtcatgatggagaaggcgacacggccactgttgtgaatgcatctgaagcgaatgaagaagctgataaaacaccatggcggccggtgtatcttacacgatttgaagttgacgggttaagtaaattgatagagaggttaaggacatggccgcaagccaaaaaggacgttccttcaacgatcgaagatcctgtcggactactggagagattagaggaactccttgaaatgcatcgggacgatgatcctaaactggcagcctctggactgcagcatctgttacagatcgataaacccataccgaagaaaccagcagctagaaaaacgggaccaaggggaccaatgcttggtacaaaggtcggcccaggaatcagacgccggcgcactcgatgtgggcagtgtgaaaattgccagcgagaggactgtggcgagtgccgaacctgtaaagatatgaagaagtttggaggagcaggaagaatgaaacagtcttgtcttatgcgagcgtgcatcgatcccaaccttcctacttgtgtgcgatgtttggtgtgtaaaaaagtcaatacggacgagaacccgttgatggagtgtcgtttctgtggcgagatcgttcacccgtcatgcctgagtgacactaaaggacactgtaagatgatcactgacattaacaactgttgggagtgtcctaaatgctgtgaagatgcatcggctccttcccttaaagaccttcctgatacacctttaaagaaacgaaaggcaagcccattgaaggaatcttcaaaaaagatgaaaaatagtcattacaccggaagccacaaagattcggatgaccttgcagcaaaacattcgccacagaaaattgagaagactccattaaaagaacaaaatggagagggaatcctcagacgaagaaagtga

Transcript

evm.model.Ap3.1395.1.5f15e4eb

ATGGATGGGGAATATGAAGTGGAGCGCAGATTGAGAAAGCAGAACCGGAGGAATTACAACTATGATGCGGATGATGTTATTGAAGGAAAACGCACGTTTAGCGTGGAAGAAAAGCTAAACAGTACGAAATTTGCTGGTGGAGATTTTGTGAAGACTTTCAGCGGTGATGAATTTACCCTAAAGTTTATACAAGAAAACGGCTTTACCTCGCCGGTTATAATTAAAAGCCCCGAAGGACTAGATATGCGGGTTCCTCGTGATGACTTTAGTGTTGAAGATGTAAAGAATTTTGTTGGAGCTCGGCGAATGGTGGATGTAATTGATGTGAACACACAACAAGCCCTAGAAATGACTTTACAACAATGGGTAAAATATTTCACAAGCGAGGAGAGAGATGAAATTTACAATGTAATAAGCTTGGAATTTAGCCACACGAAACTGGAGGACCTGGTCGAACCGCCAGAAGCGGTTCGAATAATGGATTGGGTGAACGTTGTTTGGCCGCAGCATCTTATTGAACAACAGCGAGATTCCACAAACTCTCTGGCAGATATGAAGTACCCGAAAGTAAGAAAATACGTGTTGATGAGTGTAGGAGGCTGTTACACCGACTTTCATATCGACTTTGGTGGCACGTCTGTGTGGTACCACATCATGAGGGGAAGAAAGGTCTTCTGGCTGATCCCACCGACCGAAAAGAATCTTAATCTGTACGAGCAGTGGGTTTTGTCTGGAAAGCAACAGAACGTTTTCTTTGGTGATCAGGTCGAGAAGTGCTGCCGGACTTATCTGGAAGAAGGAGATACATTCTTGATTCCTACAGGGTGGATCCATGCTGTTTTTACCCCAGATGACTCGCTTGTGTTTGGTGGAAATTTCGTGCACAGTTTTAACATCCCGGGACAAATTAAAATCAGTAAGATCGAGGACAATACTAAGGTCCCTCTCAAGTTTCGCTATCCGTTTTTGGCGCAAATTATGTGGTACGCCGCTGACAAGTATGTTCGGCTGTTGGAGCAAAATAGAAAAGAACTAGGACTGAGCACTAAACCAAAAACAGATCGATCCAAACAGGATACAACCACATCTAAGAAAAAAGACGACGTTGCTACCCCTAAAGGGAAATCCGCGAACAAACGAGGCGCCAAAAGTGATGTACAAGAAAATGAAGAAAAAACCAGCGCTTCTGTGCAAGAAGAGAACACGGAAGAAGACCCAACGGACACACCCGGCCGAAGGAGGTCCAGTCGAGTTGCACGAAACGAGGCGATTGCACGGCAAGCTCAGGAACACGCAGAGAAAGACAATGCTGGTAAAAACGTCATCAAATGTAAAGAAGAAAAGACAGACACGGAGGAACTTAGCAGAAAGAAGGGAACTCCTAAGAAACAAGCTAAGGGGAGCGAAGGCAAGGCAGAAGTGAATGGTGAAAGTCATGATGGAGAAGGCGACACGGCCACTGTTGTGAATGCATCTGAAGCGAATGAAGAAGCTGATAAAACACCATGGCGGCCGGTGTATCTTACACGATTTGAAGTTGACGGGTTAAGTAAATTGATAGAGAGGTTAAGGACATGGCCGCAAGCCAAAAAGGACGTTCCTTCAACGATCGAAGATCCTGTCGGACTACTGGAGAGATTAGAGGAACTCCTTGAAATGCATCGGGACGATGATCCTAAACTGGCAGCCTCTGGACTGCAGCATCTGTTACAGATCGATAAACCCATACCGAAGAAACCAGCAGCTAGAAAAACGGGACCAAGGGGACCAATGCTTGGTACAAAGGTCGGCCCAGGAATCAGACGCCGGCGCACTCGATGTGGGCAGTGTGAAAATTGCCAGCGAGAGGACTGTGGCGAGTGCCGAACCTGTAAAGATATGAAGAAGTTTGGAGGAGCAGGAAGAATGAAACAGTCTTGTCTTATGCGAGCGTGCATCGATCCCAACCTTCCTACTTGTGTGCGATGTTTGGTGTGTAAAAAAGTCAATACGGACGAGAACCCGTTGATGGAGTGTCGTTTCTGTGGCGAGATCGTTCACCCGTCATGCCTGAGTGACACTAAAGGACACTGTAAGATGATCACTGACATTAACAACTGTTGGGAGTGTCCTAAATGCTGTGAAGATGCATCGGCTCCTTCCCTTAAAGACCTTCCTGATACACCTTTAAAGAAACGAAAGGCAAGCCCATTGAAGGAATCTTCAAAAAAGATGAAAAATAGTCATTACACCGGAAGCCACAAAGATTCGGATGACCTTGCAGCAAAACATTCGCCACAGAAAATTGAGAAGACTCCATTAAAAGAACAAAATGGAGAGGGAATCCTCAGACGAAGAAAGTGATGTATCTTCTACTGCTATTGACGAGGAAGTGACCCCGTCACCCAAGCGCCGTCCTGTTGTAGTGCCCAAACCTCCACCTGGTCCTCCGCCGGAAGTACACCCCAAACGTGTAATTCGCCCGTGCCCAGTTTCTCCTCCTCCCCAGTCTTTCACTTTGGAAAACGACCAGAATCAGGTAATGGACCGTCAACTCTGGCTTTCAGTGTTTAGCTTTCTTTCACAGCCTGAGCTTTGTTTGTGCATGCGCGTATGTCGTACTTGGAACCGCTGGTGCATGGATCGCCGTCTCTGGTCTGTGATTGACCTTTCAGAAAAGAGAACTGTTACTCCATCTGCTTTGAAGGGCATTGTAAGGCGCCAACCTACAACGCTTAACCTGAGTTGGACAAACGTTACTTTTAAACAACTGCAATGGCTACTGAACCGTCTCCCAAGGATACGGGAACTTTATTTGAGTGGCACAACTGATGCCGCTGTGTACGCACTCTCAACTGTTGTCTGCCCCCGGTTGAAAGTCCTGGGGCTGAGCTGGTCTGCTGGAATCACTGACTCGCTGATGAAAGAACTTCTAATACCTGTTTCTGACTCCCGTGCGGGGACTGGGGATAACAAAAGCCCGCTTATTAGGCTATCCACGCTATTTCTTTCCGGAAGTGACGTCACAGGGTCGACTCTTCGCTTGCTGGTTCAACATTGCCCTGACTTGCAGAAGCTTGATTTAAGTTTCTGCCCCGGAATAACTGATCAAGATATTGAGAGCGTGTGTGGTCAAGCGTCGATCAATGAGTTTCTTCTGAGTGGCTGCGCTAAGCTCTCTGATAAGTGCTTGTCTTTTTTGAAGCTTTTCCCATCGCTTATCCGCCTTGACCTGCGCTCTTGCACGGGTGTCTCTCCCGATGCCGTCAAAGAATTTGTTAAAAGTCGCAAGGATTTGCTGAAGATACTGGAAGGAAAGCTCATTGTAAATATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P59997	Lysine-specific demethylase 2A OS=Mus musculus OX=10090 GN=Kdm2a PE=1 SV=2
Q9Y2K7	Lysine-specific demethylase 2A OS=Homo sapiens OX=9606 GN=KDM2A PE=1 SV=3
Q640I9	Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001471 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13621 all species →	Cupin_8	Cupin-like domain	Domain	Interproscan
PF17811 all species →	JHD	Jumonji helical domain	Domain	Interproscan
PF16866 all species →	PHD_4	PHD-finger	Domain	Interproscan
PF02008 all species →	zf-CXXC	CXXC zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050690 all species →	Family	JHDM1 Histone Demethylase	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR041667 all species →	Domain	Cupin-like domain 8	Interproscan
IPR041070 all species →	Domain	Jumonji, helical domain	Interproscan
IPR002857 all species →	Domain	Zinc finger, CXXC-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23123 all species →	PHD/F-BOX CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006482 all species →	Biological Process	protein demethylation	Interproscan
GO:0032452 all species →	Molecular Function	histone demethylase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10276	FBXL10_11, KDM2; F-box and leucine-rich repeat protein 10/11	EC:1.14.11.27	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.