Detailed information of evm.model.Ap3.1409 in Astrangia poculata

Genomic Location: Ap3:16114526...16144471
NR annotation: XP_020621224.1, nesprin-1-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001024 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17902
all species →
SH3_10SH3 domainDomainInterproscan
PF00435
all species →
SpectrinSpectrin repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR041615
all species →
DomainDesmoplakin, SH3 domainInterproscan
IPR043197
all species →
FamilyPlakinInterproscan
IPR018159
all species →
RepeatSpectrin/alpha-actininInterproscan
IPR002017
all species →
RepeatSpectrin repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23169
all species →
ENVOPLAKINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005198
all species →
Molecular Functionstructural molecule activityInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005882
all species →
Cellular Componentintermediate filamentInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0042060
all species →
Biological Processwound healingInterproscan
GO:0045104
all species →
Biological Processintermediate filament cytoskeleton organizationInterproscan
GO:0045296
all species →
Molecular Functioncadherin bindingInterproscan
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06115SPTBN1_4_5; spectrin beta, non-erythrocytic 1/4/5-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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