Gene detail

Detailed information of evm.model.Ap3.1438 in Astrangia poculata

Genomic Location: Ap3:16468849...16478171
NR annotation: XP_020605537.1, meiotic recombination protein SPO11-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WTK8	Meiotic recombination protein SPO11 OS=Mus musculus OX=10090 GN=Spo11 PE=1 SV=2
Q9Y5K1	Meiotic recombination protein SPO11 OS=Homo sapiens OX=9606 GN=SPO11 PE=1 SV=1
A2XFC1	DNA topoisomerase 6 subunit A3 OS=Oryza sativa subsp. indica OX=39946 GN=TOP6A3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21180 all species →	TOP6A-Spo11_Toprim	Topoisomerase 6 subunit A/Spo11, Toprim domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002815 all species →	Family	Spo11/DNA topoisomerase VI subunit A	Interproscan
IPR036078 all species →	Homologous_superfamily	Spo11/DNA topoisomerase VI subunit A superfamily	Interproscan
IPR013048 all species →	Family	Meiotic recombination, Spo11	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR034136 all species →	Domain	Topoisomerase 6 subunit A/Spo11, TOPRIM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10848 all species →	MEIOTIC RECOMBINATION PROTEIN SPO11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000228 all species →	Cellular Component	nuclear chromosome	Interproscan
GO:0000706 all species →	Biological Process	meiotic DNA double-strand break processing	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0007131 all species →	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0042138 all species →	Biological Process	meiotic DNA double-strand break formation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10878	SPO11; meiotic recombination protein SPO11	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.