Gene detail

Detailed information of evm.model.Ap3.1468 in Astrangia poculata

Genomic Location: Ap3:16701180...16709549
NR annotation: XP_022803521.1, counting factor associated protein D-like [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1468

atgcataaaggaacttttattcctggagttgttgtctgggttatattctttgcattcattttgaacaaccgatgcaaaggacagcactacttctttgaggaaatcaaccagttgaaaagcaattttgaccctgaacaaaatgaaacaggagcagatatctccgaagagcaggagcctgtgataacgtttgagaatgcaactcttctacaagatgatgaccctaaagaattcaccgcagaaaagatcaagtttcccgagttttaccacgcgcagggaatcatttctttgccttacgatggaatcatcgagccgtttgaagcgtggtacggcggccgacataaaatgagtcgcattgactattattacggaatggacaagacgtatcagagaggggaccttatgccgtatggggctctgataaagttggtgcccgctcactggagcaaaggagacgacctagataaaaacacacggagctgctggtacaggcccggatttcgatggtccccagagagggggcagagtgttgtccctaaggacttgaaaggattcgagtacgttagcgacgagatccacagtggaatgcctgtttacaagttaaagcgcacggcaactgtgtacaagaagaacaacacctacattctttacgtgacaaaagagagaccctacaaacccgtgcgttacgtcatgcacggctatgacacccttcttcactcgttttatgatcattatgttgtggattacctttcattccacgaatgggactttgacttcaatgtcatgaaaattcctaaaggaacctcctgcaagaaaaagattgagatgatgaagtcaaggtaccattttaatccgatggcagagttcatgcatgaaaactttgaagatggtgaggtggaagaaatgtttgaagaatttaagaaaactcacggtaaatcatacgatgatccagcagaacatgagcagagaaaacacatatttcgtcacaacatcaggttcattaattctaagaatagagccgctctgaacttcacgctggcgccgaatgagctcagtgacgtcacagagaacgagtttgaaatgtacaaaggcttattgattgatcccagcggtggggacgaggggctcaagaaacaggagataccagaagctagactgactattcctaagacaccactccctgactctctggactggcgggaatatggtgtggtgacccctgctaaggctcaagggctttgtggctcgtgctggacgttttcttccactggaccattagaaggagcttacgccatccagacagggaaacttctagatatatcagaacagcagcttatggactgcagttggggttttggtaacagtggttgccgtggaggttactcatggagagctcttgtctgggccaggaaacatggagtggcgtccagtaagagctacggcaggtaccttgcgcaggaaggatattgccactgtgcaaaagaagacggttgtgatgttataaacttcaagagagtagtgaccgtaaagaaaaataacgtggaagaattaaagcaaggcctggcaaagtttggtccggcatccatagcgatcaacgttggtagaaagagtttgaagttttataactcaggcgtctacgatgatcctgaatgtagcacaaagacaaatcatggagttgtagtggttggatttggagaagaaaatggcactccatattggattgtgaaaaattcatgggggaaattctggggcgaagaaggatttgttaaaattgcaagaaaagataacttgtgcggagtcctcaccaacgagccgatatttgtatcaatgaatgagacagttggcgatgattctaatgaaatttatccatttagacggatgaaaaaacagagtttttttgatgtggaaagaagacttaatgtgacaactttaaaactatcaccttttgattacaaaaggtctaaaatacgatttgatgagcttaccaagccacatgaaaaaacttctgctaaaaattaa

Transcript

evm.model.Ap3.1468

ATGCATAAAGGAACTTTTATTCCTGGAGTTGTTGTCTGGGTTATATTCTTTGCATTCATTTTGAACAACCGATGCAAAGGACAGCACTACTTCTTTGAGGAAATCAACCAGTTGAAAAGCAATTTTGACCCTGAACAAAATGAAACAGGAGCAGATATCTCCGAAGAGCAGGAGCCTGTGATAACGTTTGAGAATGCAACTCTTCTACAAGATGATGACCCTAAAGAATTCACCGCAGAAAAGATCAAGTTTCCCGAGTTTTACCACGCGCAGGGAATCATTTCTTTGCCTTACGATGGAATCATCGAGCCGTTTGAAGCGTGGTACGGCGGCCGACATAAAATGAGTCGCATTGACTATTATTACGGAATGGACAAGACGTATCAGAGAGGGGACCTTATGCCGTATGGGGCTCTGATAAAGTTGGTGCCCGCTCACTGGAGCAAAGGAGACGACCTAGATAAAAACACACGGAGCTGCTGGTACAGGCCCGGATTTCGATGGTCCCCAGAGAGGGGGCAGAGTGTTGTCCCTAAGGACTTGAAAGGATTCGAGTACGTTAGCGACGAGATCCACAGTGGAATGCCTGTTTACAAGTTAAAGCGCACGGCAACTGTGTACAAGAAGAACAACACCTACATTCTTTACGTGACAAAAGAGAGACCCTACAAACCCGTGCGTTACGTCATGCACGGCTATGACACCCTTCTTCACTCGTTTTATGATCATTATGTTGTGGATTACCTTTCATTCCACGAATGGGACTTTGACTTCAATGTCATGAAAATTCCTAAAGGAACCTCCTGCAAGAAAAAGATTGAGATGATGAAGTCAAGGTACCATTTTAATCCGATGGCAGAGTTCATGCATGAAAACTTTGAAGATGGTGAGGTGGAAGAAATGTTTGAAGAATTTAAGAAAACTCACGGTAAATCATACGATGATCCAGCAGAACATGAGCAGAGAAAACACATATTTCGTCACAACATCAGGTTCATTAATTCTAAGAATAGAGCCGCTCTGAACTTCACGCTGGCGCCGAATGAGCTCAGTGACGTCACAGAGAACGAGTTTGAAATGTACAAAGGCTTATTGATTGATCCCAGCGGTGGGGACGAGGGGCTCAAGAAACAGGAGATACCAGAAGCTAGACTGACTATTCCTAAGACACCACTCCCTGACTCTCTGGACTGGCGGGAATATGGTGTGGTGACCCCTGCTAAGGCTCAAGGGCTTTGTGGCTCGTGCTGGACGTTTTCTTCCACTGGACCATTAGAAGGAGCTTACGCCATCCAGACAGGGAAACTTCTAGATATATCAGAACAGCAGCTTATGGACTGCAGTTGGGGTTTTGGTAACAGTGGTTGCCGTGGAGGTTACTCATGGAGAGCTCTTGTCTGGGCCAGGAAACATGGAGTGGCGTCCAGTAAGAGCTACGGCAGGTACCTTGCGCAGGAAGGATATTGCCACTGTGCAAAAGAAGACGGTTGTGATGTTATAAACTTCAAGAGAGTAGTGACCGTAAAGAAAAATAACGTGGAAGAATTAAAGCAAGGCCTGGCAAAGTTTGGTCCGGCATCCATAGCGATCAACGTTGGTAGAAAGAGTTTGAAGTTTTATAACTCAGGCGTCTACGATGATCCTGAATGTAGCACAAAGACAAATCATGGAGTTGTAGTGGTTGGATTTGGAGAAGAAAATGGCACTCCATATTGGATTGTGAAAAATTCATGGGGGAAATTCTGGGGCGAAGAAGGATTTGTTAAAATTGCAAGAAAAGATAACTTGTGCGGAGTCCTCACCAACGAGCCGATATTTGTATCAATGAATGAGACAGTTGGCGATGATTCTAATGAAATTTATCCATTTAGACGGATGAAAAAACAGAGTTTTTTTGATGTGGAAAGAAGACTTAATGTGACAACTTTAAAACTATCACCTTTTGATTACAAAAGGTCTAAAATACGATTTGATGAGCTTACCAAGCCACATGAAAAAACTTCTGCTAAAAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q40143	Cysteine proteinase 3 OS=Solanum lycopersicum OX=4081 GN=CYP-3 PE=2 SV=1
A0A068CNX1	Vanillin synthase OS=Glechoma hederacea OX=28509 GN=VAN PE=1 SV=1
Q54TR1	Counting factor associated protein D OS=Dictyostelium discoideum OX=44689 GN=cfaD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000586 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08246 all species →	Inhibitor_I29	Cathepsin propeptide inhibitor domain (I29)	Domain	Interproscan
PF00112 all species →	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025661 all species →	Active_site	Cysteine peptidase, asparagine active site	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013201 all species →	Domain	Cathepsin propeptide inhibitor domain (I29)	Interproscan
IPR039417 all species →	Domain	Papain-like cysteine endopeptidase	Interproscan
IPR025660 all species →	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR013128 all species →	Family	Peptidase C1A	Interproscan
IPR000668 all species →	Domain	Peptidase C1A, papain C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12411 all species →	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1468.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.