Gene detail

Detailed information of evm.model.Ap3.1469 in Astrangia poculata

Genomic Location: Ap3:16711991...16724001
NR annotation: CAH3161956.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1469

atgccttatggaagagtgatttgtgtttgttttacgatcctcggacactggatacttgttggaagtacacctgtcaaggagggcggtaaaaaatcagatcaagattacaaacccggcgtagatttgaggagtttgcattttcccactgaataccatgcaactggtgtcctctcgcttcccacaagcaacattagcgagccgtttgaagtttggcacagtcaaacttatgacaagagtaggattgattactatcatggtgaggtgaaaacctttcagagaggggatttaggaagaaatggaatgttcttcaaaattattccaaaattctcttacaagcgacacaagaatcatcgccattttacgggatgctggaagaggtatgggtccaagactcgtaaggctaaggcccagtccattctaccgtgtaacgcggcctggccgtttaagtctcgtctggaagattttaagtatgaaggtgatgcaacaatcaatggcgtactgtgcaccaaatggagctataacgtgaccgtgtttgaacgtaataactcgtacgtgttttacgcgaccaagaccaacccaccgagacctgtgtactttgaaatgaacggctatgataccctgttggtttcttactacgataagtacgttattcgctatcacagctttgaggagtgggattatgatccggatgacgaccctgatgtttttgagattccacatctacatcatgacaaatggtgctggaacattgacaagaggtccaaaggcagcgatggcgcctctgtgtccctgaaccctatgggagagtttgccatgctgcaccatgaggaggaccctgtagatgaagacttccacgcgttccgtaagaaacacaagagagactataaaaataaagtggaacatcaaaaaaggaaacacattttcagacacaatttaagatatattcgctccatgaacatgaaaggcaacgccttccatttaaatgtcaatcatttcgccgacatgacggatgaagaatttgaaagccacaaaggactcatgcctggagatggaggttacgggtcacgtgacttcgacgaagaggacgtagatcaaggaactggttatgtcagagattataacagcaatggcgaaaagcgggaagaaatcaaaaagaagagcagatatggccatgttcctgatgagttagactggagaaaatatggtgctgtaattcctccaaaaggccaaggaacatgtgggtcttgttgggcgttcgctgccgctggagcggttgaaggcgcgaatttcattcagactggcaaattaatcgacttatccgagcaacagcttctggactgcacatgggccaccccaggagtcactcatggcaataacggatgcctaggcgggtggacgtggaaagcttttgcttggatcaaaaagtttggtttagctacagctgggagctacggacagtacaggggacaggaaggctattgcaaaactgaaggattgaaaactggtgcaaggattcacagttatagaagagttaaacgctacaacagggaagctgtaaagaaagcgctagcttatcacggaccagcgaccatctccatcaacgccaatcctaaaacattgaaattctacagtcatggagtcttagatgatattacatgcaataataaaaccgaccacgccgtattgctggtcggatacggcaccgaaaacggagtgccttactggttaataaaaaactcctggtctcataactggggagataacggatttattaaaatcagacatggactgtgtggcgtggaaaagagaccatttgttgtactaaacaagggacgaaagccgttaccatggcaactggaagaaaaagcaaacaaagaaaaggagaggttactaaaggaaaagttgcgagaacaaatgaaagctgaatcagcgaggcacgaagacagtaaaattgttcgcaaggacgcaatagaagaccctgacttcagggacattgaggatgacgaatatttagacgatgtcgagttttggtga

Transcript

evm.model.Ap3.1469

ATGCCTTATGGAAGAGTGATTTGTGTTTGTTTTACGATCCTCGGACACTGGATACTTGTTGGAAGTACACCTGTCAAGGAGGGCGGTAAAAAATCAGATCAAGATTACAAACCCGGCGTAGATTTGAGGAGTTTGCATTTTCCCACTGAATACCATGCAACTGGTGTCCTCTCGCTTCCCACAAGCAACATTAGCGAGCCGTTTGAAGTTTGGCACAGTCAAACTTATGACAAGAGTAGGATTGATTACTATCATGGTGAGGTGAAAACCTTTCAGAGAGGGGATTTAGGAAGAAATGGAATGTTCTTCAAAATTATTCCAAAATTCTCTTACAAGCGACACAAGAATCATCGCCATTTTACGGGATGCTGGAAGAGGTATGGGTCCAAGACTCGTAAGGCTAAGGCCCAGTCCATTCTACCGTGTAACGCGGCCTGGCCGTTTAAGTCTCGTCTGGAAGATTTTAAGTATGAAGGTGATGCAACAATCAATGGCGTACTGTGCACCAAATGGAGCTATAACGTGACCGTGTTTGAACGTAATAACTCGTACGTGTTTTACGCGACCAAGACCAACCCACCGAGACCTGTGTACTTTGAAATGAACGGCTATGATACCCTGTTGGTTTCTTACTACGATAAGTACGTTATTCGCTATCACAGCTTTGAGGAGTGGGATTATGATCCGGATGACGACCCTGATGTTTTTGAGATTCCACATCTACATCATGACAAATGGTGCTGGAACATTGACAAGAGGTCCAAAGGCAGCGATGGCGCCTCTGTGTCCCTGAACCCTATGGGAGAGTTTGCCATGCTGCACCATGAGGAGGACCCTGTAGATGAAGACTTCCACGCGTTCCGTAAGAAACACAAGAGAGACTATAAAAATAAAGTGGAACATCAAAAAAGGAAACACATTTTCAGACACAATTTAAGATATATTCGCTCCATGAACATGAAAGGCAACGCCTTCCATTTAAATGTCAATCATTTCGCCGACATGACGGATGAAGAATTTGAAAGCCACAAAGGACTCATGCCTGGAGATGGAGGTTACGGGTCACGTGACTTCGACGAAGAGGACGTAGATCAAGGAACTGGTTATGTCAGAGATTATAACAGCAATGGCGAAAAGCGGGAAGAAATCAAAAAGAAGAGCAGATATGGCCATGTTCCTGATGAGTTAGACTGGAGAAAATATGGTGCTGTAATTCCTCCAAAAGGCCAAGGAACATGTGGGTCTTGTTGGGCGTTCGCTGCCGCTGGAGCGGTTGAAGGCGCGAATTTCATTCAGACTGGCAAATTAATCGACTTATCCGAGCAACAGCTTCTGGACTGCACATGGGCCACCCCAGGAGTCACTCATGGCAATAACGGATGCCTAGGCGGGTGGACGTGGAAAGCTTTTGCTTGGATCAAAAAGTTTGGTTTAGCTACAGCTGGGAGCTACGGACAGTACAGGGGACAGGAAGGCTATTGCAAAACTGAAGGATTGAAAACTGGTGCAAGGATTCACAGTTATAGAAGAGTTAAACGCTACAACAGGGAAGCTGTAAAGAAAGCGCTAGCTTATCACGGACCAGCGACCATCTCCATCAACGCCAATCCTAAAACATTGAAATTCTACAGTCATGGAGTCTTAGATGATATTACATGCAATAATAAAACCGACCACGCCGTATTGCTGGTCGGATACGGCACCGAAAACGGAGTGCCTTACTGGTTAATAAAAAACTCCTGGTCTCATAACTGGGGAGATAACGGATTTATTAAAATCAGACATGGACTGTGTGGCGTGGAAAAGAGACCATTTGTTGTACTAAACAAGGGACGAAAGCCGTTACCATGGCAACTGGAAGAAAAAGCAAACAAAGAAAAGGAGAGGTTACTAAAGGAAAAGTTGCGAGAACAAATGAAAGCTGAATCAGCGAGGCACGAAGACAGTAAAATTGTTCGCAAGGACGCAATAGAAGACCCTGACTTCAGGGACATTGAGGATGACGAATATTTAGACGATGTCGAGTTTTGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54TR1	Counting factor associated protein D OS=Dictyostelium discoideum OX=44689 GN=cfaD PE=1 SV=1
P61276	Cathepsin K OS=Macaca fascicularis OX=9541 GN=CTSK PE=2 SV=1
P61277	Cathepsin K OS=Macaca mulatta OX=9544 GN=CTSK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000586 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00112 all species →	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan
PF08246 all species →	Inhibitor_I29	Cathepsin propeptide inhibitor domain (I29)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR013128 all species →	Family	Peptidase C1A	Interproscan
IPR039417 all species →	Domain	Papain-like cysteine endopeptidase	Interproscan
IPR000668 all species →	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR025660 all species →	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR013201 all species →	Domain	Cathepsin propeptide inhibitor domain (I29)	Interproscan
IPR025661 all species →	Active_site	Cysteine peptidase, asparagine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12411 all species →	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01275	CTSC; cathepsin C	EC:3.4.14.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.