Detailed information of evm.model.Ap3.1481 in Astrangia poculata

Genomic Location: Ap3:16884581...16885882
NR annotation: XP_020620489.1, transcription factor Sox-14-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O42342Transcription factor Sox-7 OS=Xenopus laevis OX=8355 GN=sox7 PE=2 SV=1
Q28GD5Transcription factor Sox-7 OS=Xenopus tropicalis OX=8364 GN=sox7 PE=2 SV=1
P40646Transcription factor SOX-7 OS=Mus musculus OX=10090 GN=Sox7 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000488 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR050140
all species →		FamilySRY-related HMG-box transcription factorsInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270
all species →		SOX TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653
all species →		Biological Processanatomical structure morphogenesisInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1481.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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