Gene detail

Detailed information of evm.model.Ap3.1490 in Astrangia poculata

Genomic Location: Ap3:16965111...16985748
NR annotation: CAH3161982.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1490

atgacgcaggtcaggcttgacaatggcaacaatgacgtcaagacgccggaagagaactgcagcacattgtcgtcgcttagtgactttgacgtcacgcgattgtcagaggaagagatgtcgacattgcgagaggtttttgagagacagtgggtcttacatgaaagaaacgctgcggagaagagaaagtttgaacaagaaatcaaggagatggaagcgaaaatcacccagaggtctcgtggactgtctaggaaagaactgtcacagctgtgtaccatctgtctcaaggtgaaagtagctactacagctgcactggtctgtggcgtgtgcagaaaaaagacatgtacgagatgtggcaacagatatcaaggtacttggatatgtgctctgtgtatgaaaaagcgagaaatgttcaagttcagcggtggtgcctggcacaatgacgtggaacggcatgagaggtttcaggtacaggaaatactaaacaggctggctgaagaatccgtcagaagaatggaaatgacgaattacaacacccaggaggaaactgtcaggatttccacgccggccgaaaatcctccgcgccttaatcaccctcccactattgaaaccaagccgcaggttacaattgcaaacaagttctttctgaaaacaggcaacgatgacggggatcaggttcatgatgacgtcatggatgagtatgatgacgatgatgacgtttttgaagaccaagatgatggaagtgaaagtgacaattatcttaattttccccacgaagaggagcagaggcgactggacggttcttgtgatagttactcttcagttcactattcctccttagatgaggaaggtgctttttatgtagtagcccagtgtgcatcaggagggactccggaagaccttagtcccgtagaggatactaaacttgaagggcagtcgccgaaacgaaaagttgcagtgtccattctctcaaagcaaagaaattgtccacttatccataaagttaccttgcaaaaagatttgaaaatgtctgaggaattcggctcaggcgctgagtttggcattagagtagtaggtggaagaatgtgcacaggaggttttattggtgtgtacgttgccaaggtgatgagaggattgtcagctgtgcagtgtattaaagaaggtgaccagatcctggaatggaatcacacttcaatggtggatgtgacatttgagaaggtcagaagtatcgtcgctgagtcgccacaggaaatcacgctcgttttgtgtcataatgcagccagttttacagattctcgaactccgtcgaaagaaaggatttcagtggcgagagaagaaaaacagaaaaggaaaagacatgaaagtgtaaagtgttggtcaaggtggtctcttacgcagctgacagaaaacgatggcgctcttgacaagtatgagacccaaaggacccaatttcccgccgacgagaagatagggcaaatacagctgcacttatggcatgatccacacgggaacaacatggttgtgcgagtgttgagtgcaagaggcctttcactgcaggacatgccgaaccaggaattacccaacctttatgtgctactttacttgctgcctaacagagagatctcaagtcactttaggaccaacacagacccagaaacagttactccaaagtgggatctcagttttatcttttcaaatatccccgaaagtgagacagacagacagtacgacgacaggacagacagtactgcacttgacagacagacaacagacagtactgcacttgacagacagacagatagtcgacttgagacagacagacagacactaacctctaggacactggaagtaactttatggagtgaggaccagaaaaaacgcaacgtatttctcggagaggttctcattaaactgacgcctgagccgttgtgtagtggtgcacagtggtatgatcttgtggatcacgacgagtcctccagctttcttccagttccaatgactcgcagacattctctaagtaacctagatcccataaacgaaggtaatagttgcccgtgggatgctaacgccaaagtcaagaaatacagcttacccgtttgcaaacctgtcagccgtagcattagcacggtcaacatctcaagaggtatcacgccttccatagtcatcaacaatggaaacggtgacaccgctcttcatcatagaaaacggagacgagctgattccgtggtcacaatggaagcgttccgtcctagagctaaaacagagctccaaaaaaggggggattctttccggagaaaatttttagagtcatgcaaatgcaagtcggcgcctgccacacccactgcaagtatcccagcgtccttggaagatctgagacggaaaagggcgttcacacgatcaacagatatcgtaaaagcgccaataaaactgtcgcagtttttgttatcgtttaaatctgcgcaagacagcactagtgaacaagaacctacggccaaagtggacagagagggaaagaaaaaaggagcgctgggtgccatgaaaaaatatccttcaaatttacgaattcgtttgagtagactgaccataaagcaatctcctcttgaagaatgttccactcccggacctcgtggcccaacgaccagacgcaatgaaccaccgggatgtcagtctgcacctgcgacaccaaatgtcaccaaatcatcagaagacattcgaagagagagatcgtttaccaactatttgctagtacctccaagtcctggagggttaactggacacttgaagttgaagcgtctcactacaccccctgtggctgaaagtaaagaattaggttttccaaagctggccttgcagacacagctcagtaatgtggatgaaaaagaagccaccaaaggacaaaacgaagaaaacgaatgtcaggcgattttacccgaaagttcaccattggagaacgtaacacaggcctcatgttcaaacgtcaacgatgaatggcaaattcctcttattaccatacagccctcaacctctggcgaggtgtctccatttggagagtcttgtacagaacataacgaaccggaaccggaagtagaagcagagcagccagcggaaaagaaaggaaccatgtacgctttgagaaggtattcaagaagtttgatgcctcgttcatcgagtctgaaatcatcagacaagatgtccatgttcggtgaagatcctgtaatgggtgtggttggaccaggtcagatgagacgagggagctatcaaggtcatgaacttggttacattcgaattggtttgctaggaatacgtggaattcttgaagtcgaaatcatacgaggtgtaggtttaatggtcccaggtgaccatccgccagatacttatgtgaagacgtatctgatccaggaccaaatcaggcttctgaagcgaaagacgtccatcactcgtcagagcgttaatccagtttacaactgtaaaatcaaataccccgggcgtgatctccataacaaggaattagtggtgagcatatggtgcaagcagggcatatttggtcgcaaagtgttgcttggagaagttcggattgccttgggttcacttaaccttagtgtcaagcaagtttcttggtataaattatttatcgagtctcaactgagtgacgactaa

Transcript

evm.model.Ap3.1490

ATGACGCAGGTCAGGCTTGACAATGGCAACAATGACGTCAAGACGCCGGAAGAGAACTGCAGCACATTGTCGTCGCTTAGTGACTTTGACGTCACGCGATTGTCAGAGGAAGAGATGTCGACATTGCGAGAGGTTTTTGAGAGACAGTGGGTCTTACATGAAAGAAACGCTGCGGAGAAGAGAAAGTTTGAACAAGAAATCAAGGAGATGGAAGCGAAAATCACCCAGAGGTCTCGTGGACTGTCTAGGAAAGAACTGTCACAGCTGTGTACCATCTGTCTCAAGGTGAAAGTAGCTACTACAGCTGCACTGGTCTGTGGCGTGTGCAGAAAAAAGACATGTACGAGATGTGGCAACAGATATCAAGGTACTTGGATATGTGCTCTGTGTATGAAAAAGCGAGAAATGTTCAAGTTCAGCGGTGGTGCCTGGCACAATGACGTGGAACGGCATGAGAGGTTTCAGGTACAGGAAATACTAAACAGGCTGGCTGAAGAATCCGTCAGAAGAATGGAAATGACGAATTACAACACCCAGGAGGAAACTGTCAGGATTTCCACGCCGGCCGAAAATCCTCCGCGCCTTAATCACCCTCCCACTATTGAAACCAAGCCGCAGGTTACAATTGCAAACAAGTTCTTTCTGAAAACAGGCAACGATGACGGGGATCAGGTTCATGATGACGTCATGGATGAGTATGATGACGATGATGACGTTTTTGAAGACCAAGATGATGGAAGTGAAAGTGACAATTATCTTAATTTTCCCCACGAAGAGGAGCAGAGGCGACTGGACGGTTCTTGTGATAGTTACTCTTCAGTTCACTATTCCTCCTTAGATGAGGAAGGTGCTTTTTATGTAGTAGCCCAGTGTGCATCAGGAGGGACTCCGGAAGACCTTAGTCCCGTAGAGGATACTAAACTTGAAGGGCAGTCGCCGAAACGAAAAGTTGCAGTGTCCATTCTCTCAAAGCAAAGAAATTGTCCACTTATCCATAAAGTTACCTTGCAAAAAGATTTGAAAATGTCTGAGGAATTCGGCTCAGGCGCTGAGTTTGGCATTAGAGTAGTAGGTGGAAGAATGTGCACAGGAGGTTTTATTGGTGTGTACGTTGCCAAGGTGATGAGAGGATTGTCAGCTGTGCAGTGTATTAAAGAAGGTGACCAGATCCTGGAATGGAATCACACTTCAATGGTGGATGTGACATTTGAGAAGGTCAGAAGTATCGTCGCTGAGTCGCCACAGGAAATCACGCTCGTTTTGTGTCATAATGCAGCCAGTTTTACAGATTCTCGAACTCCGTCGAAAGAAAGGATTTCAGTGGCGAGAGAAGAAAAACAGAAAAGGAAAAGACATGAAAGTGTAAAGTGTTGGTCAAGGTGGTCTCTTACGCAGCTGACAGAAAACGATGGCGCTCTTGACAAGTATGAGACCCAAAGGACCCAATTTCCCGCCGACGAGAAGATAGGGCAAATACAGCTGCACTTATGGCATGATCCACACGGGAACAACATGGTTGTGCGAGTGTTGAGTGCAAGAGGCCTTTCACTGCAGGACATGCCGAACCAGGAATTACCCAACCTTTATGTGCTACTTTACTTGCTGCCTAACAGAGAGATCTCAAGTCACTTTAGGACCAACACAGACCCAGAAACAGTTACTCCAAAGTGGGATCTCAGTTTTATCTTTTCAAATATCCCCGAAAGTGAGACAGACAGACAGTACGACGACAGGACAGACAGTACTGCACTTGACAGACAGACAACAGACAGTACTGCACTTGACAGACAGACAGATAGTCGACTTGAGACAGACAGACAGACACTAACCTCTAGGACACTGGAAGTAACTTTATGGAGTGAGGACCAGAAAAAACGCAACGTATTTCTCGGAGAGGTTCTCATTAAACTGACGCCTGAGCCGTTGTGTAGTGGTGCACAGTGGTATGATCTTGTGGATCACGACGAGTCCTCCAGCTTTCTTCCAGTTCCAATGACTCGCAGACATTCTCTAAGTAACCTAGATCCCATAAACGAAGGTAATAGTTGCCCGTGGGATGCTAACGCCAAAGTCAAGAAATACAGCTTACCCGTTTGCAAACCTGTCAGCCGTAGCATTAGCACGGTCAACATCTCAAGAGGTATCACGCCTTCCATAGTCATCAACAATGGAAACGGTGACACCGCTCTTCATCATAGAAAACGGAGACGAGCTGATTCCGTGGTCACAATGGAAGCGTTCCGTCCTAGAGCTAAAACAGAGCTCCAAAAAAGGGGGGATTCTTTCCGGAGAAAATTTTTAGAGTCATGCAAATGCAAGTCGGCGCCTGCCACACCCACTGCAAGTATCCCAGCGTCCTTGGAAGATCTGAGACGGAAAAGGGCGTTCACACGATCAACAGATATCGTAAAAGCGCCAATAAAACTGTCGCAGTTTTTGTTATCGTTTAAATCTGCGCAAGACAGCACTAGTGAACAAGAACCTACGGCCAAAGTGGACAGAGAGGGAAAGAAAAAAGGAGCGCTGGGTGCCATGAAAAAATATCCTTCAAATTTACGAATTCGTTTGAGTAGACTGACCATAAAGCAATCTCCTCTTGAAGAATGTTCCACTCCCGGACCTCGTGGCCCAACGACCAGACGCAATGAACCACCGGGATGTCAGTCTGCACCTGCGACACCAAATGTCACCAAATCATCAGAAGACATTCGAAGAGAGAGATCGTTTACCAACTATTTGCTAGTACCTCCAAGTCCTGGAGGGTTAACTGGACACTTGAAGTTGAAGCGTCTCACTACACCCCCTGTGGCTGAAAGTAAAGAATTAGGTTTTCCAAAGCTGGCCTTGCAGACACAGCTCAGTAATGTGGATGAAAAAGAAGCCACCAAAGGACAAAACGAAGAAAACGAATGTCAGGCGATTTTACCCGAAAGTTCACCATTGGAGAACGTAACACAGGCCTCATGTTCAAACGTCAACGATGAATGGCAAATTCCTCTTATTACCATACAGCCCTCAACCTCTGGCGAGGTGTCTCCATTTGGAGAGTCTTGTACAGAACATAACGAACCGGAACCGGAAGTAGAAGCAGAGCAGCCAGCGGAAAAGAAAGGAACCATGTACGCTTTGAGAAGGTATTCAAGAAGTTTGATGCCTCGTTCATCGAGTCTGAAATCATCAGACAAGATGTCCATGTTCGGTGAAGATCCTGTAATGGGTGTGGTTGGACCAGGTCAGATGAGACGAGGGAGCTATCAAGGTCATGAACTTGGTTACATTCGAATTGGTTTGCTAGGAATACGTGGAATTCTTGAAGTCGAAATCATACGAGGTGTAGGTTTAATGGTCCCAGGTGACCATCCGCCAGATACTTATGTGAAGACGTATCTGATCCAGGACCAAATCAGGCTTCTGAAGCGAAAGACGTCCATCACTCGTCAGAGCGTTAATCCAGTTTACAACTGTAAAATCAAATACCCCGGGCGTGATCTCCATAACAAGGAATTAGTGGTGAGCATATGGTGCAAGCAGGGCATATTTGGTCGCAAAGTGTTGCTTGGAGAAGTTCGGATTGCCTTGGGTTCACTTAACCTTAGTGTCAAGCAAGTTTCTTGGTATAAATTATTTATCGAGTCTCAACTGAGTGACGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96C24	Synaptotagmin-like protein 4 OS=Homo sapiens OX=9606 GN=SYTL4 PE=1 SV=2
Q8VHQ7	Synaptotagmin-like protein 4 OS=Rattus norvegicus OX=10116 GN=Sytl4 PE=1 SV=1
Q9R0Q1	Synaptotagmin-like protein 4 OS=Mus musculus OX=10090 GN=Sytl4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011423 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF02318 all species →	FYVE_2	FYVE-type zinc finger	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR039032 all species →	Family	Rim-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR041282 all species →	Domain	FYVE-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12157 all species →	REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0042391 all species →	Biological Process	regulation of membrane potential	Interproscan
GO:0042734 all species →	Cellular Component	presynaptic membrane	Interproscan
GO:0044325 all species →	Molecular Function	transmembrane transporter binding	Interproscan
GO:0048167 all species →	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788 all species →	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048791 all species →	Biological Process	calcium ion-regulated exocytosis of neurotransmitter	Interproscan
GO:0050806 all species →	Biological Process	positive regulation of synaptic transmission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1490.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.