Detailed information of evm.model.Ap3.1615 in Astrangia poculata

Genomic Location: Ap3:18047173...18063470
NR annotation: KAJ7387683.1, Vacuolar protein sorting-associated protein 53 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8CCB4Vacuolar protein sorting-associated protein 53 homolog OS=Mus musculus OX=10090 GN=Vps53 PE=1 SV=1
Q5ZLD7Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus OX=9031 GN=VPS53 PE=2 SV=1
Q5R5J4Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii OX=9601 GN=VPS53 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004027 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04100
all species →		Vps53_NVps53, N-terminal RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007234
all species →		DomainVps53, N-terminalInterproscan
IPR039766
all species →		FamilyVacuolar protein sorting-associated protein 53Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12820
all species →		VACUOLAR SORTING PROTEIN 53Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000938
all species →		Cellular ComponentGARP complexInterproscan
GO:0042147
all species →		Biological Processretrograde transport, endosome to GolgiInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1615.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.1615 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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