Detailed information of evm.model.Ap3.1641 in Astrangia poculata

Genomic Location: Ap3:18317887...18320412
NR annotation: HAS45470.1, hypothetical protein [Microscillaceae bacterium]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P14381Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1
Q03278Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2
P16423Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13966
all species →		zf-RVTzinc-binding in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR026960
all species →		DomainReverse transcriptase zinc-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31635
all species →		REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap3.1641. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1641.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP