Detailed information of evm.model.Ap3.170 in Astrangia poculata

Genomic Location: Ap3:1647229...1654071
NR annotation: XP_020618642.1, coiled-coil domain-containing protein 74B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007803 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14916
all species →		CCDC92Coiled-coil domain of unknown functionCoiled-coilInterproscan
PF14917
all species →		CCDC74_CCoiled coil protein 74, C terminalCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040370
all species →		FamilyCoiled-coil domain-containing protein 74A/74B/92Interproscan
IPR039496
all species →		DomainCCDC92/74, N-terminalInterproscan
IPR029422
all species →		DomainCoiled coil protein 74, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14882
all species →		COILED-COIL DOMAIN-CONTAINING 74AInterproscan

 Gene Ontology
No Gene Ontology signature was recorded for evm.model.Ap3.170 in Astrangia poculata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.170.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.170 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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