Detailed information of evm.model.Ap3.1704 in Astrangia poculata

Genomic Location: Ap3:18705830...18707660
NR annotation: KAJ7375084.1, Melanopsin [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6XL69Melanopsin OS=Rutilus rutilus OX=48668 GN=opn4 PE=2 SV=1
Q5YKK9Melanopsin OS=Felis catus OX=9685 GN=OPN4 PE=2 SV=1
Q1JPS6Melanopsin-like OS=Danio rerio OX=7955 GN=opn4l PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000680 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00001
all species →		7tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000276
all species →		FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452
all species →		DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR050125
all species →		FamilyG-protein coupled receptor opsinsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24240
all species →		OPSINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004930
all species →		Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186
all species →		Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0001750
all species →		Cellular Componentphotoreceptor outer segmentInterproscan
GO:0005887
all species →		Cellular Componentplasma membraneInterproscan
GO:0007602
all species →		Biological ProcessphototransductionInterproscan
GO:0008020
all species →		Molecular FunctionG protein-coupled photoreceptor activityInterproscan
GO:0071482
all species →		Biological Processcellular response to light stimulusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1704.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.1704 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record

Show the sample table (49 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR10674714 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674715 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674724 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674733 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674734 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674735 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674736 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674737 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674739 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674743 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674746 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674747 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674748 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674750 whole organism · cold control whole organism not recorded cold control SRP237293 0.00
SRR10674706 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674707 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674708 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674717 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674718 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674720 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674721 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674725 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674731 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674741 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674752 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674753 whole organism · heat control whole organism not recorded heat control SRP237293 0.00
SRR10674711 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674712 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674713 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674722 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674723 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674730 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674732 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674738 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674740 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674744 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674745 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674749 whole organism · cold challenge whole organism not recorded cold challenge SRP237293 0.00
SRR10674709 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674710 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674716 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674719 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674726 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674727 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674728 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674729 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674742 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674751 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00
SRR10674754 whole organism · heat challenge whole organism not recorded heat challenge SRP237293 0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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