Gene detail

Detailed information of evm.model.Ap3.1767 in Astrangia poculata

Genomic Location: Ap3:19401341...19407074
NR annotation: XP_027047877.1, uncharacterized protein LOC113675481 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1767

atgtttaaaggacacctgctgataaaagtaaacagccgtaaacagcctgatctcttcgctacttattccagccgagtgaaccaagtgtctactgtgttcttcaacaaagaaaaggtgatccaatgtgttccaaagaaatttgagagaagacgtgctttcccgaatttttcgttgtctaactcaactgatgagttgtcttttgcggtttcagtagagcctcaattgctaaatcagctaatatttgcgattgaaagaaaagccagcaaaaacttcacagtagtaaagttgtttccaccaaatgatgccgggagtggcctggtgccgcaggaaagtggtcaaggcgtcatggcggatcaaaggtctgcctttctcggtaaaaaggcggactcgttccgctttcacaggcctgggttcgagcacgttcccggtagtgtgtcattagaatccgctaatcatccgggactttatcttcggtacaagaattacaagtttcatttggagaagatgaaaccaacaggagtgtttgagaaagatgcgactttcatcgagagaaagacacaaaccaaaggagccgctgcgtacgagctgtttaaccaccctggctggttcatgtgccatgataccaacagtaaatttgggctcgttgctaggaaagtggaaatcaaaagccaagatttccttttgggatgtctttacatggctgttgctcaaaagccaaccaaacaggatttaaaggaaagattaaaactctcggacgtaaaaaacgaaagtggggagaccaaaggaactattcgaaacgtctctggtataatttcgaacgacgtttccgcggttaacttacttaaagcacaacctgggaatgtaagtgaaagttctcaaaacaaaccggaatctctggtggataatcaaagcaataaaactaatgaacaacagctcttaagcaaaaacaacgcgaccgttagcaatgacgaggctcccgctaaattgtcgtcgaattcgacgactgaaaaaaacatcacatctgcaaaaacaatggatcaagaatctaatagtaagtcggttaacaattctacaaaagaaattagtgacttaaattacgcaaatgtcacggaaaacgtgcacgtcacgaacgtcacgcaaaaaccgaagatagatctgccgaacaagttggctgcccaagtcgaagatcttgttgctaacaatttaaagaatagttcaaaagtaccagcctatgcaaaaaatggaaagcaagtcgccatacaagaaaagacgaacccgaatgttgagtctgcagatgaggggtcagcggccgccaaacaaaccgcgcaagcccttggacaaggaatcacttcggcgccagcaaaaacaaatccgcagtacaaaggagacgccctcgcactgcagaaaactcaaaacggggttccgtcaccattttcgcaaaagccagctgcgaatgcgaatctgaatacactgccaaaacagtttactatgcaccttgagttcccaaatggaaaaaagtttcaaaacgcaacgttcgctgacgggaaaacccccagttcatctacaaatcaactggcacagataactgcgcaagcaaccgcggcagcattgggcttaatccagaacgcagtacaaaaccaacagccacaacaacaggcaccaaagtatacgaaagcgggagctggttttccctttcaacaacaacaacggcaacaaaaacactttcagcctataaattacgttaatcagcaaatgcgcccgcaagcaatgttccgcgctgttcctaattatataactgcgcctgcgcctgtggctccagggagaccgctggtaaacccttttgcagtaaaagctccgaattcccagtttgcttatcagccgttcaaacctgccgctccacaacaactgtttaataacggatacaataaccaatacccagtaaaaggctggagagggctggcatcggttgggaaacagagtttagtgggaaacagtgctaaatttcaagggagcgtcaagaacaaaccaaatgcacaggagaaaagcaattctaaacttgaggacgagacagccagcaaaatctccgaagaaaatgacaaatgtatcagtctaaagttcgtcaacaaagttcgcaagccaatcaaactggtgtcaagtatgaagcttgggggttatctggtcactgccgagacatttaaactcaagaccgtcttcaaacacccgcgaaaacatcatcacgtgattttctacgcgcgtgactcggaagatagagacaatgaagtgttactaaacaacaataacgcaatcgccgtcacgccaggaggatgtgacctgccgtttagaagcgtcataatgtcacaccacggacaaattacaaacaaagaagttgaacatattcgagaagacgacgaatacaacgcgtcaatggaagcagctcggaaggcagtacacggtaagggagacgagaacttcacgcagtggaccgcctttggtccttgttcggccacatgtggaaggagcttacagacaagaacacgctcgtgtaaaccaggaaaggtctgcaaaggacaagctattgagagtaggacgtgtatacagaccccgtgccccggtaagctttaa

Transcript

evm.model.Ap3.1767

ATGTTTAAAGGACACCTGCTGATAAAAGTAAACAGCCGTAAACAGCCTGATCTCTTCGCTACTTATTCCAGCCGAGTGAACCAAGTGTCTACTGTGTTCTTCAACAAAGAAAAGGTGATCCAATGTGTTCCAAAGAAATTTGAGAGAAGACGTGCTTTCCCGAATTTTTCGTTGTCTAACTCAACTGATGAGTTGTCTTTTGCGGTTTCAGTAGAGCCTCAATTGCTAAATCAGCTAATATTTGCGATTGAAAGAAAAGCCAGCAAAAACTTCACAGTAGTAAAGTTGTTTCCACCAAATGATGCCGGGAGTGGCCTGGTGCCGCAGGAAAGTGGTCAAGGCGTCATGGCGGATCAAAGGTCTGCCTTTCTCGGTAAAAAGGCGGACTCGTTCCGCTTTCACAGGCCTGGGTTCGAGCACGTTCCCGGTAGTGTGTCATTAGAATCCGCTAATCATCCGGGACTTTATCTTCGGTACAAGAATTACAAGTTTCATTTGGAGAAGATGAAACCAACAGGAGTGTTTGAGAAAGATGCGACTTTCATCGAGAGAAAGACACAAACCAAAGGAGCCGCTGCGTACGAGCTGTTTAACCACCCTGGCTGGTTCATGTGCCATGATACCAACAGTAAATTTGGGCTCGTTGCTAGGAAAGTGGAAATCAAAAGCCAAGATTTCCTTTTGGGATGTCTTTACATGGCTGTTGCTCAAAAGCCAACCAAACAGGATTTAAAGGAAAGATTAAAACTCTCGGACGTAAAAAACGAAAGTGGGGAGACCAAAGGAACTATTCGAAACGTCTCTGGTATAATTTCGAACGACGTTTCCGCGGTTAACTTACTTAAAGCACAACCTGGGAATGTAAGTGAAAGTTCTCAAAACAAACCGGAATCTCTGGTGGATAATCAAAGCAATAAAACTAATGAACAACAGCTCTTAAGCAAAAACAACGCGACCGTTAGCAATGACGAGGCTCCCGCTAAATTGTCGTCGAATTCGACGACTGAAAAAAACATCACATCTGCAAAAACAATGGATCAAGAATCTAATAGTAAGTCGGTTAACAATTCTACAAAAGAAATTAGTGACTTAAATTACGCAAATGTCACGGAAAACGTGCACGTCACGAACGTCACGCAAAAACCGAAGATAGATCTGCCGAACAAGTTGGCTGCCCAAGTCGAAGATCTTGTTGCTAACAATTTAAAGAATAGTTCAAAAGTACCAGCCTATGCAAAAAATGGAAAGCAAGTCGCCATACAAGAAAAGACGAACCCGAATGTTGAGTCTGCAGATGAGGGGTCAGCGGCCGCCAAACAAACCGCGCAAGCCCTTGGACAAGGAATCACTTCGGCGCCAGCAAAAACAAATCCGCAGTACAAAGGAGACGCCCTCGCACTGCAGAAAACTCAAAACGGGGTTCCGTCACCATTTTCGCAAAAGCCAGCTGCGAATGCGAATCTGAATACACTGCCAAAACAGTTTACTATGCACCTTGAGTTCCCAAATGGAAAAAAGTTTCAAAACGCAACGTTCGCTGACGGGAAAACCCCCAGTTCATCTACAAATCAACTGGCACAGATAACTGCGCAAGCAACCGCGGCAGCATTGGGCTTAATCCAGAACGCAGTACAAAACCAACAGCCACAACAACAGGCACCAAAGTATACGAAAGCGGGAGCTGGTTTTCCCTTTCAACAACAACAACGGCAACAAAAACACTTTCAGCCTATAAATTACGTTAATCAGCAAATGCGCCCGCAAGCAATGTTCCGCGCTGTTCCTAATTATATAACTGCGCCTGCGCCTGTGGCTCCAGGGAGACCGCTGGTAAACCCTTTTGCAGTAAAAGCTCCGAATTCCCAGTTTGCTTATCAGCCGTTCAAACCTGCCGCTCCACAACAACTGTTTAATAACGGATACAATAACCAATACCCAGTAAAAGGCTGGAGAGGGCTGGCATCGGTTGGGAAACAGAGTTTAGTGGGAAACAGTGCTAAATTTCAAGGGAGCGTCAAGAACAAACCAAATGCACAGGAGAAAAGCAATTCTAAACTTGAGGACGAGACAGCCAGCAAAATCTCCGAAGAAAATGACAAATGTATCAGTCTAAAGTTCGTCAACAAAGTTCGCAAGCCAATCAAACTGGTGTCAAGTATGAAGCTTGGGGGTTATCTGGTCACTGCCGAGACATTTAAACTCAAGACCGTCTTCAAACACCCGCGAAAACATCATCACGTGATTTTCTACGCGCGTGACTCGGAAGATAGAGACAATGAAGTGTTACTAAACAACAATAACGCAATCGCCGTCACGCCAGGAGGATGTGACCTGCCGTTTAGAAGCGTCATAATGTCACACCACGGACAAATTACAAACAAAGAAGTTGAACATATTCGAGAAGACGACGAATACAACGCGTCAATGGAAGCAGCTCGGAAGGCAGTACACGGTAAGGGAGACGAGAACTTCACGCAGTGGACCGCCTTTGGTCCTTGTTCGGCCACATGTGGAAGGAGCTTACAGACAAGAACACGCTCGTGTAAACCAGGAAAGGTCTGCAAAGGACAAGCTATTGAGAGTAGGACGTGTATACAGACCCCGTGCCCCGGTAAGCTTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003159 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF05270 all species →	AbfB	Alpha-L-arabinofuranosidase B (ABFB) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR052065 all species →	Family	Complement and asymmetry regulator	Interproscan
IPR036195 all species →	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR007934 all species →	Domain	Alpha-L-arabinofuranosidase B, arabinose-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22906 all species →	PROPERDIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046373 all species →	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556 all species →	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10598	PPIL2, CYC4, CHP60; peptidyl-prolyl cis-trans isomerase-like 2	EC:5.2.1.8	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.