Gene detail

Detailed information of evm.model.Ap3.1809 in Astrangia poculata

Genomic Location: Ap3:19665486...19684912
NR annotation: XP_027042566.1, leupaxin-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1809

atgtcgttcttttccgaggctcaacacagatttttaccgattccagaggatggcagaatcgaaactaaatcatttttagatgctgcaagtgaagtagtgccttttttcgatgttttaggacctacggcttttgcgccggtcaagtcagacatcaatggtaatataaagaaactgagagaaaaatttgccaaagatccagaaaaatataaaactctgcaagacattgtagagagtgaaatagaggaaaagacaactcaggcaaagaactctgccacagatgccctgctttggctgaaaagggcaatgcaattcatcatcgtttttctccaggaggttcttacgggagaacaagatctggtaaaatgcgccaagaaagcttatgagggatcactgaagaaatttcatggctggatggtccaaggaattttttctcttgccatgaaggctgtcccatatcgcaaggacttcattgccagccttggtcggggaaaagtagatgaagcaactgttttaagtgaaatgaaagatttccttgatctcttgtcagcaaatattgatgttgttgagcaattctatcagaaaaataacttggatagttccaaggttaacctcattcccaaggtctcccccccgcccctgccagagcaagggtgtggagagagagagcccctgggattgagctgtttaaagatcacatttccacaagaacttaacaatagtactatgaacctcagaaacactattttagccattctgatggacggttatagatgccatcatacaacacttacagcatgtgttgtgattttaggattttcaaatcagtgcaggaagcagtccaagaatttgatcttcttaaagtccgttagtttggtagttgaacgagttcggcgaattatcaagtggttacctgaagctattcttcaagttgccatggaagatttggatgcgttgctggcagatcttcaagcgacgagtccgactgtttccgcttcgccaactgaaagaggaaggcaaactacgaatggaagagaatcgcctgatattcctccgcctttacccccacctccggcgttcgaagcgttcgatcctcaaggatcgaaccctaaagacgatgtgctattccctgcacctgctccatcatcgagtttgggtcagaatctctccgagttggacagtttattggaaaacctaagcaatcctctgcactatccttcggatccgccagacaggcgaattagtggaggatcaccgcgagctagtcaatcgtcaccatctccaaaggcagcagtaaatggtagaccatctagctataaggggcctgtaactgcagttgctcatgataacagatcagctgatgtacgatatagagaaagaaatggacctgaaagcccaaaaggccaagtctccacgtctcacgttgccactcccaccgcccagcacagccaactcaggcaggcaagggaccttgacaacaggcaatcacgtacagcctcgacagcaactaaagaacttgatgacttgatggcatcactgtcagattttaaagttaatgtcagtgcagcacctactccgtcacaagccaggctcagtggagattatgctaagcctaataaagctaaaccttcatctcctgccgctgttggtaaggtcagccagctggactccatgttgggttcacttcagtcggacatgacaaggcaaggagtcagcacaacgaagaaaggagagtgtgcagcatgcaacaaaccaatcataggccaagtttgcactgccttgggtcgcacatggcatcctgagcatttcacttgtgttacttgtgaggttccgttaggtgctactaatttctttgagcgagatggaaggcctttctgtgagagagattaccacgagcagtttgcaccaagatgcgcttactgtagcgggcccatcctagattcgtgtgtgacagccctggaccagacgtggcatcctgaacattttgtctgtgctagttgcggcaggccatttggcgacactggtttccatgaaagagatggaaaacctttttgccgtgaagattactacgccatgtttgctccccggtgtggagggtgtggccagccgataatggatagctacatcactgctctcagtgcccattggcactcggaatgctttgtgtgctcggaatgtcatcaagcctttccaggaggaagcttctttgagcatgatggtcgaccatactgtgagatgcactaccactcccgtcgaggtaccttgtgctacagctgtcagaagcccatcacgggtcggtgcatcactgccatgcaccgtaaatttcacccagagcactttgtttgtgcattctgcctcaagcaacttaacaaaggcaccttcaaggaacagaacgacaagccctactgccacccatgtttcataaaactttttgggtag

Transcript

evm.model.Ap3.1809

ATTATGTCGTTCTTTTCCGAGGCTCAACACAGATTTTTACCGATTCCAGAGGATGGCAGAATCGAAACTAAATCATTTTTAGATGCTGCAAGTGAAGTAGTGCCTTTTTTCGATGTTTTAGGACCTACGGCTTTTGCGCCGGTCAAGTCAGACATCAATGGTAATATAAAGAAACTGAGAGAAAAATTTGCCAAAGATCCAGAAAAATATAAAACTCTGCAAGACATTGTAGAGAGTGAAATAGAGGAAAAGACAACTCAGGCAAAGAACTCTGCCACAGATGCCCTGCTTTGGCTGAAAAGGGCAATGCAATTCATCATCGTTTTTCTCCAGGAGGTTCTTACGGGAGAACAAGATCTGGTAAAATGCGCCAAGAAAGCTTATGAGGGATCACTGAAGAAATTTCATGGCTGGATGGTCCAAGGAATTTTTTCTCTTGCCATGAAGGCTGTCCCATATCGCAAGGACTTCATTGCCAGCCTTGGTCGGGGAAAAGTAGATGAAGCAACTGTTTTAAGTGAAATGAAAGATTTCCTTGATCTCTTGTCAGCAAATATTGATGTTGTTGAGCAATTCTATCAGAAAAATAACTTGGATAGTTCCAAGGTTAACCTCATTCCCAAGGTCTCCCCCCCGCCCCTGCCAGAGCAAGGGTGTGGAGAGAGAGAGCCCCTGGGATTGAGCTGTTTAAAGATCACATTTCCACAAGAACTTAACAATAGTACTATGAACCTCAGAAACACTATTTTAGCCATTCTGATGGACGGTTATAGATGCCATCATACAACACTTACAGCATGTGTTGTGATTTTAGGATTTTCAAATCAGTGCAGGAAGCAGTCCAAGAATTTGATCTTCTTAAAGTCCGTTAGTTTGGTAGTTGAACGAGTTCGGCGAATTATCAAGTGGTTACCTGAAGCTATTCTTCAAGTTGCCATGGAAGATTTGGATGCGTTGCTGGCAGATCTTCAAGCGACGAGTCCGACTGTTTCCGCTTCGCCAACTGAAAGAGGAAGGCAAACTACGAATGGAAGAGAATCGCCTGATATTCCTCCGCCTTTACCCCCACCTCCGGCGTTCGAAGCGTTCGATCCTCAAGGATCGAACCCTAAAGACGATGTGCTATTCCCTGCACCTGCTCCATCATCGAGTTTGGGTCAGAATCTCTCCGAGTTGGACAGTTTATTGGAAAACCTAAGCAATCCTCTGCACTATCCTTCGGATCCGCCAGACAGGCGAATTAGTGGAGGATCACCGCGAGCTAGTCAATCGTCACCATCTCCAAAGGCAGCAGTAAATGGTAGACCATCTAGCTATAAGGGGCCTGTAACTGCAGTTGCTCATGATAACAGATCAGCTGATGTACGATATAGAGAAAGAAATGGACCTGAAAGCCCAAAAGGCCAAGTCTCCACGTCTCACGTTGCCACTCCCACCGCCCAGCACAGCCAACTCAGGCAGGCAAGGGACCTTGACAACAGGCAATCACGTACAGCCTCGACAGCAACTAAAGAACTTGATGACTTGATGGCATCACTGTCAGATTTTAAAGTTAATGTCAGTGCAGCACCTACTCCGTCACAAGCCAGGCTCAGTGGAGATTATGCTAAGCCTAATAAAGCTAAACCTTCATCTCCTGCCGCTGTTGGTAAGGTCAGCCAGCTGGACTCCATGTTGGGTTCACTTCAGTCGGACATGACAAGGCAAGGAGTCAGCACAACGAAGAAAGGAGAGTGTGCAGCATGCAACAAACCAATCATAGGCCAAGTTTGCACTGCCTTGGGTCGCACATGGCATCCTGAGCATTTCACTTGTGTTACTTGTGAGGTTCCGTTAGGTGCTACTAATTTCTTTGAGCGAGATGGAAGGCCTTTCTGTGAGAGAGATTACCACGAGCAGTTTGCACCAAGATGCGCTTACTGTAGCGGGCCCATCCTAGATTCGTGTGTGACAGCCCTGGACCAGACGTGGCATCCTGAACATTTTGTCTGTGCTAGTTGCGGCAGGCCATTTGGCGACACTGGTTTCCATGAAAGAGATGGAAAACCTTTTTGCCGTGAAGATTACTACGCCATGTTTGCTCCCCGGTGTGGAGGGTGTGGCCAGCCGATAATGGATAGCTACATCACTGCTCTCAGTGCCCATTGGCACTCGGAATGCTTTGTGTGCTCGGAATGTCATCAAGCCTTTCCAGGAGGAAGCTTCTTTGAGCATGATGGTCGACCATACTGTGAGATGCACTACCACTCCCGTCGAGGTACCTTGTGCTACAGCTGTCAGAAGCCCATCACGGGTCGGTGCATCACTGCCATGCACCGTAAATTTCACCCAGAGCACTTTGTTTGTGCATTCTGCCTCAAGCAACTTAACAAAGGCACCTTCAAGGAACAGAACGACAAGCCCTACTGCCACCCATGTTTCATAAAACTTTTTGGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VI36	Paxillin OS=Mus musculus OX=10090 GN=Pxn PE=1 SV=1
Q5R7I1	Paxillin OS=Pongo abelii OX=9601 GN=PXN PE=2 SV=1
P49023	Paxillin OS=Homo sapiens OX=9606 GN=PXN PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08718 all species →	GLTP	Glycolipid transfer protein (GLTP)	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF03535 all species →	Paxillin	Paxillin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR014830 all species →	Domain	Glycolipid transfer protein domain	Interproscan
IPR036497 all species →	Homologous_superfamily	Glycolipid transfer protein superfamily	Interproscan
IPR001904 all species →	Domain	Paxillin, Lim domain 4	Interproscan
IPR047075 all species →	Domain	Paxillin/TGFB1I1, LIM domain 1	Interproscan
IPR050604 all species →	Family	PDZ and LIM domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24214 all species →	PDZ AND LIM DOMAIN PROTEIN ZASP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0120009 all species →	Biological Process	intermembrane lipid transfer	Interproscan
GO:0120013 all species →	Molecular Function	lipid transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap3.1809.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.