Detailed information of evm.model.Ap3.1846 in Astrangia poculata

Genomic Location: Ap3:20100620...20116521
NR annotation: XP_022793103.1, RING finger protein 215-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5SPX3RING finger protein 215 OS=Mus musculus OX=10090 GN=Rnf215 PE=2 SV=1
Q9Y6U7RING finger protein 215 OS=Homo sapiens OX=9606 GN=RNF215 PE=4 SV=2
Q5DTZ6RING finger protein 150 OS=Mus musculus OX=10090 GN=Rnf150 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0010485 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13639
all species →		zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051073
all species →		FamilyZNRF3/Arkadia E3 ubiquitin-protein ligasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16200
all species →		RING ZINC FINGERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006511
all species →		Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap3.1846.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap3.1846 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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