Gene detail

Detailed information of evm.model.Ap3.187 in Astrangia poculata

Genomic Location: Ap3:1808857...1835354
NR annotation: XP_020622394.1, two pore calcium channel protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.187

atggacgaagaaccaagcttatattttcgatatcaggatgcagccatatttctccaggagggcaagaacaatgaccggtttgatacccacccctcccagcgaacagtacgatggtatcttattgctcactcaacatttttctacattttggacatgatggcagcactctttcttctttccttgggactgactgaaaaaccagcatcaggggaagtgccaagagatgacagcctttatctacctgtacctgtccatgcaaccctggaaattttgtcactatttgttgttactgctggtatggctgtcaaactgaagtggcaaggagcaaagctatactttactcacaagagaaccctttgtaaggttattgtcttgagtgtggtgtttgtggaagccattgttgttcttgtgagaagtgagaatcatgtacgagtgacaagagctctgcgaccactcttccttatagacactcattattgttatggggttagaagagttctcagacaaattttgctctctcttccgccaatcttggacatgctgttcctgttgttctttatcatggtaatctttgcaatgctggggttctacttgttttctgacaatgaaaaagatgagcgatcctgtatggtaggacgtgttgggtcgaatgctctagcaggttctgagttgtacagcaataactggtggttcctgtcgaatttctgtgagccttatggctatcctgatgtgatgatgccagcctatggccggacacgatggtctgttgtattttttggtgtctacatctcagttatcctttactttcttatgaatctgcttttggctgtggtgtatgacacatttaccaacatcgagaaggataagtttagaaagttgttccttcacaaaaggcaagctgttaggcaggcttacaagctactctgccatgaaaatcctccacactggattccattacatagctttattggtctgatgtcatttttcaaacctaaaagtactcttgtggagaaatttcttgtgttcaagtcattagacacaagtcaaagaagacaactgagtctggaagaattttatcacgtgtttgagaacagcgagatgaagtggaaacaagtcacagaacactacaatcagtggtttatctgtctgaagcggccatgtaactgcctgtaccgcgctgtcaaaggtattcgatggctgataacacaaaaagcttttgaatacttcatttatgcggtcatcattacaaatgcgatttcctttattgttgatattgttgtgttttcaaacacaccacaaaacgaacgagcaagtaagagagaggaacttcgttggtatcatattgtcttcatttctatatatacagccgaagctgcgctcaaaatcataggtcttgggtttaggaagtacttcctctccggttggaatttgtttgacttttttgtgactcttgctggtattattggtgcagtgtcaacatcgttcagcttcatcgtttgtctcaggcctctaagacttttgttgctctttaaattaaagcagagataccgcgatgtgtttgagacaatgggagtgttattgccgcgaatgaccagggtggctgtagttattcttctgctgtattactcgtttggaatcattggaatagaatgcttttctggtcttgaactgaaaaactgttgcaagaacacgtcatgggaaggagaatacaaagaagacggatattattatttaaacaacttcaacgatttactacattcctacgtgacattgtttgagctgacggtggtcaataactggatgataattatggaagggattgttttcgtgacgtcagactgggctaggatattcttcatgtcctttttcattgtcacgatggttgttatgaccattattgtagcgtttattcttgaagccttcctctttcgaattgaatatcgcaaagaacatcctacagatgagaaagaggacatgaaaataaggaaagaagttacagttagctatgaggaactcctgggtttgggcgaagagtttgtgagagacctgcagccaagccagcttgtcaagtatatcggaaaacgttccaaaacgaaaatggatttgagtataaaaatgtacgcagatgaagtcgagcaatggatacaaaaagaacgggttatcgacatgtcagaaacgtatgcacagtttgaaatcatggaagatccaccgcgcatgcctgccacaaacaatccctggtcaccaggttcttcgagcagtccacgcaatggccgcgtaactgaagatcttaaattaggacagataaacacgtcggtggacgaagacgacgaaaagttatga

Transcript

evm.model.Ap3.187

ATGGACGAAGAACCAAGCTTATATTTTCGATATCAGGATGCAGCCATATTTCTCCAGGAGGGCAAGAACAATGACCGGTTTGATACCCACCCCTCCCAGCGAACAGTACGATGGTATCTTATTGCTCACTCAACATTTTTCTACATTTTGGACATGATGGCAGCACTCTTTCTTCTTTCCTTGGGACTGACTGAAAAACCAGCATCAGGGGAAGTGCCAAGAGATGACAGCCTTTATCTACCTGTACCTGTCCATGCAACCCTGGAAATTTTGTCACTATTTGTTGTTACTGCTGGTATGGCTGTCAAACTGAAGTGGCAAGGAGCAAAGCTATACTTTACTCACAAGAGAACCCTTTGTAAGGTTATTGTCTTGAGTGTGGTGTTTGTGGAAGCCATTGTTGTTCTTGTGAGAAGTGAGAATCATGTACGAGTGACAAGAGCTCTGCGACCACTCTTCCTTATAGACACTCATTATTGTTATGGGGTTAGAAGAGTTCTCAGACAAATTTTGCTCTCTCTTCCGCCAATCTTGGACATGCTGTTCCTGTTGTTCTTTATCATGGTAATCTTTGCAATGCTGGGGTTCTACTTGTTTTCTGACAATGAAAAAGATGAGCGATCCTGTATGGTAGGACGTGTTGGGTCGAATGCTCTAGCAGGTTCTGAGTTGTACAGCAATAACTGGTGGTTCCTGTCGAATTTCTGTGAGCCTTATGGCTATCCTGATGTGATGATGCCAGCCTATGGCCGGACACGATGGTCTGTTGTATTTTTTGGTGTCTACATCTCAGTTATCCTTTACTTTCTTATGAATCTGCTTTTGGCTGTGGTGTATGACACATTTACCAACATCGAGAAGGATAAGTTTAGAAAGTTGTTCCTTCACAAAAGGCAAGCTGTTAGGCAGGCTTACAAGCTACTCTGCCATGAAAATCCTCCACACTGGATTCCATTACATAGCTTTATTGGTCTGATGTCATTTTTCAAACCTAAAAGTACTCTTGTGGAGAAATTTCTTGTGTTCAAGTCATTAGACACAAGTCAAAGAAGACAACTGAGTCTGGAAGAATTTTATCACGTGTTTGAGAACAGCGAGATGAAGTGGAAACAAGTCACAGAACACTACAATCAGTGGTTTATCTGTCTGAAGCGGCCATGTAACTGCCTGTACCGCGCTGTCAAAGGTATTCGATGGCTGATAACACAAAAAGCTTTTGAATACTTCATTTATGCGGTCATCATTACAAATGCGATTTCCTTTATTGTTGATATTGTTGTGTTTTCAAACACACCACAAAACGAACGAGCAAGTAAGAGAGAGGAACTTCGTTGGTATCATATTGTCTTCATTTCTATATATACAGCCGAAGCTGCGCTCAAAATCATAGGTCTTGGGTTTAGGAAGTACTTCCTCTCCGGTTGGAATTTGTTTGACTTTTTTGTGACTCTTGCTGGTATTATTGGTGCAGTGTCAACATCGTTCAGCTTCATCGTTTGTCTCAGGCCTCTAAGACTTTTGTTGCTCTTTAAATTAAAGCAGAGATACCGCGATGTGTTTGAGACAATGGGAGTGTTATTGCCGCGAATGACCAGGGTGGCTGTAGTTATTCTTCTGCTGTATTACTCGTTTGGAATCATTGGAATAGAATGCTTTTCTGGTCTTGAACTGAAAAACTGTTGCAAGAACACGTCATGGGAAGGAGAATACAAAGAAGACGGATATTATTATTTAAACAACTTCAACGATTTACTACATTCCTACGTGACATTGTTTGAGCTGACGGTGGTCAATAACTGGATGATAATTATGGAAGGGATTGTTTTCGTGACGTCAGACTGGGCTAGGATATTCTTCATGTCCTTTTTCATTGTCACGATGGTTGTTATGACCATTATTGTAGCGTTTATTCTTGAAGCCTTCCTCTTTCGAATTGAATATCGCAAAGAACATCCTACAGATGAGAAAGAGGACATGAAAATAAGGAAAGAAGTTACAGTTAGCTATGAGGAACTCCTGGGTTTGGGCGAAGAGTTTGTGAGAGACCTGCAGCCAAGCCAGCTTGTCAAGTATATCGGAAAACGTTCCAAAACGAAAATGGATTTGAGTATAAAAATGTACGCAGATGAAGTCGAGCAATGGATACAAAAAGAACGGGTTATCGACATGTCAGAAACGTATGCACAGTTTGAAATCATGGAAGATCCACCGCGCATGCCTGCCACAAACAATCCCTGGTCACCAGGTTCTTCGAGCAGTCCACGCAATGGCCGCGTAACTGAAGATCTTAAATTAGGACAGATAAACACGTCGGTGGACGAAGACGACGAAAAGTTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULQ1	Two pore channel protein 1 OS=Homo sapiens OX=9606 GN=TPCN1 PE=1 SV=3
Q9WTN5	Two pore calcium channel protein 1 OS=Rattus norvegicus OX=10116 GN=Tpcn1 PE=1 SV=2
Q9EQJ0	Two pore calcium channel protein 1 OS=Mus musculus OX=10090 GN=Tpcn1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002203 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR028801 all species →	Family	Two pore channel protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46474 all species →	TWO PORE CALCIUM CHANNEL PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010008 all species →	Cellular Component	endosome membrane	Interproscan
GO:0022832 all species →	Molecular Function	voltage-gated channel activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16896	TPCN1; two pore calcium channel protein 1	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.