Gene detail

Detailed information of evm.model.Ap3.1878 in Astrangia poculata

Genomic Location: Ap3:20351121...20378874
NR annotation: RMX47002.1, hypothetical protein pdam_00009616 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap3.1878

atggattttgatcaaacacaagcgattgacgattacgaagaagaggaagaagagcaagtggaagaagataaagctaatccaaagaaaagggagaaaagtcatctattaggaaaaagggactgggtggactgtaaattggaatggtccttagcatttaccctgatgcatttgacacgtcagtgtcccagggccagaggaggaggagtggatttgacatcagtggttgttattggagtgggtgataatgttataggaagagatgggaagtgtaacattacagtgcctatcaaggccttgtcaaagaaacatgcctgcattgaagtgcaaagagatcttcaccttctttatgattgtggaagcaagaacagaacaaagaaaggaaaggagaagaacctggaggaaccacaagataaaaccgctttggccaatgttctgacgaagttttacgccggcgataaaggaagttatggcaaattgtttgaaaactctttcttaaagcccactgtgcgatatgagcttaaacatggtgatatgttgacattgggtgatgtgaaatgtcagtatttggttagtctggacatggaagaggaagatgaagatgaaactggttcagaaacaggatcagagtccatgcttcaagatgtaaacactgaagaggaactggatcttgataagccaattgttactgaggatgatagcacttcaaagaagattaatcaaaaggatgatgtttggagggatgagttattgcagccaacagaagatcaccaaacagcaaaaccaaccaaggatgatgaagaggcatacgctgcagacacagattcagacacagatgaggagaggccacttgcagtagcagcaatggcgactgtactgtacagctctgaagatgaacaagagacacctagaaggcaacaggttaccactagcgttccaagtaaaggaaacaatagcatggagggacagactctagcatttggacttggaagcccacgtaatgtttttaagagcagagattccactgactcttctgaatctcacccaggacaaacagcaagcgttccaccaactttaatgcttagcactgaatctgattcacagtcagatgggaaacatgatatgtcatctgatcaggataacaaaccaagctcattcaagcaccctggagctaggggctcaggaacccaacctccctgcgatccaacacttttgtatggctctgaatctgatgacggaagccccataaaaaaacccaagtacccagaagcaaggggttctgacaaaggcccctcttgtgagccaacacttctttatggttccgaatctgatgatgggactcccaagaagaaaccaagacagccagaagcttcaaatgcaccaactttgttatatgaatctgatcctgaggaaggaactggtgcagcacccaatgaatcagatgcaagaggagatggtcagcatgatcaacgtgccactgatgatcaaaccctgttgtatagtgaggcatctgaaggaaaaacaccaagtcttcctgctataaccgcggaagatgtgggggatgattctccagaagaatctgcagagaagagaccagacatacaagatatgcaagaggctacagttgcagtgaaggacagtgatgcaacactgccatatgctgaagctgaaatgagttcaactgatgatgaagaagattcagaggcagttgcagatgataaaaagattaatcttgatgaaactccagcggatgtggagcccaccttggcttacactgtggactcaagaaaagaggattcaacagatgatgaacaagacagtgtggatgccgatgattacggagcggatattgccactcaagcctatgctgctgataatgttgatagtgactctgaagcagaaagtgaacctattccacttggtagtgatcacgcagcacccaagagtgatgcaaaccaaccagctaagctttctgacttggaggcaacacaggcatattgtgtagaagaggaggacaactctgacagttcagattctcaaccactgcctattggtactgctgcaacttcatctcatgacaacattttagcaacaatggcatatggattagaggcgactcaagctcacgatgtttctgagaaggatggtgatagtgataaaggtggagaaaaggatgagcaagacaacaaaccaactctcgcttatgacttactggcgactcaggcatacggcgctggtgatgatgacgaggaagaggatacgagagaaagccatcaagagacagttcaagagccatcagcttatgccggggctttagttaacaaaagtgaggctgaccaacctaccattgcgtatggactggaggcaactcaagcatatggcgccaatgatgaaaccgatgatgaggagactgataatgaagacagaagcagcacaggtggggaccagggcagaggtcatgatgcaaatgcagcaacacttgcatatggtttagaccccactcagccttatggaggtgatgatgatgatgataatgatgacattaatgacgataataaagatgataaagacagtggtcatccaagacaggatttcctggccacattgccttatgggttggaggaaacacaggcttacgatggggataacaatgatgcagattcagctcagaatagcatggttgaagctactcaagcctatgggattgaagagccgtctgaagccgaattacaagcacagcaaagtgaaagagcaacaaagaccactaacaaaaagagagttgcttttgctagctcttctacagaggtgactgaggcagatgaaagtgaagttgacgtgccagtgattgataaaggtgaccaaagcaaaccttctaccagcactgctgctgatgtagaggactacctgccagacagtgaagatttgatacctccaccacgatcacgttctaagagggggagaaaaaagccggtcattgaagagtcccaggaagaaactagtcaacagtctgacaagttggaagaacctatggatcaatcagaatctgtggtaaaaatttccagtgctggtataacagaacagatggatgggacaagtgaagcaccagaaggaaaagaaaaaatgcagctgactaaaccggcaacaagaagaggaagaaagggagcaatgagggtgacgattgaacctgaagaaccacaggaggaggaggaaagagaaacatcaacaaggaaaggacggagaggtgtaatgacggcactgacaaatgagcctgaagatgaagaggaaaatgttgcaaaggaaacttcagctgcgggtagaaagaggggaagacaaacagcaaaaacaacaagtgttgcagcagaagaggagaaagaggcacctgtaaccaaatcaagaagaggacggagaggaaaggcagtacaagctgaagccacttcagtgtcagaaacaccactcaagacacccacagacagtgcagtagtacaagaggtaactgattctgaaacttctgcaactgtggttgtagaatctacccttaatgttcgcagaggaggaagaggaaggggaagaaagggagcggcagctgaagaaacagctcagacagctcaagatgaaaaggtccctggtacttctgttgaacctcagccagaatcacacacagaaaatgtgccaacaagagggaaaggaagagggaagggaagaggaaaaaaaagtcagccatcagttaatgaatcaatgacaacagattcccttgatgcagaagtacctgctatttctgatgaagtacagccagagcaaaccctagctacacctgccagagggaaagggagaggaaaaggcagaggaaggaaaacacaacctaagttaacttttgatcctgaattagacgcttctacaagttcttctccacacttggctatgttttacacgggactgattccaaatggatcctgttcgaaaatcagactggatcttaaggccttctgtttacacaggaccattttggaacccgtcccaaatggattcaaaactggacctgctgttttgcaggcagcagaagaaacatcccagccagaatcaaattcaggttccagggaaagctctcaaacaagaaaggggcggggcagaggaaaagtatcaagggaaaccacagagcaaaattctgacattactgtcaccatgtcagaaaatacagaacttagtgagagcattggagactcagaggaaagtacaactgcaggaagtagcaaagggagtcgcagaggaaggcaaagaaaagatgcagtggaggaatcagaaacaatggtggtgacaggtcttggaggtcaactggtggataacattcataactgtacacatctggttacagataaggtacgacgcactgtcaagttcttatgtgggctggccggtggacaaattattgttttgccttcgtggctggatgcttgcaaaaaggccaagagttttgttgacataattcaaagtgctaaaggagagtttttgtccagtatgccgagaagcaaagatgacagagtttttgtagtctcttgtgaagaggacagaagtgtttgtaagaagccactggatgctgggatccctgtggttagtgctgaagtacttctcacaggagtgctgcggcaggagcttaaccttgaggaacataaattatttgcagaggaaatgtcagatgcctcacaagatacaaacagtgcctcaagtggacaaagcaaaagaagaagagaagcatcagaggtgggtgcgtcgtcatcttccacggcagaaacaaaaaggactgggtccaaaagaaggaagagatga

Transcript

evm.model.Ap3.1878

ATGGATTTTGATCAAACACAAGCGATTGACGATTACGAAGAAGAGGAAGAAGAGCAAGTGGAAGAAGATAAAGCTAATCCAAAGAAAAGGGAGAAAAGTCATCTATTAGGAAAAAGGGACTGGGTGGACTGTAAATTGGAATGGTCCTTAGCATTTACCCTGATGCATTTGACACGTCAGTGTCCCAGGGCCAGAGGAGGAGGAGTGGATTTGACATCAGTGGTTGTTATTGGAGTGGGTGATAATGTTATAGGAAGAGATGGGAAGTGTAACATTACAGTGCCTATCAAGGCCTTGTCAAAGAAACATGCCTGCATTGAAGTGCAAAGAGATCTTCACCTTCTTTATGATTGTGGAAGCAAGAACAGAACAAAGAAAGGAAAGGAGAAGAACCTGGAGGAACCACAAGATAAAACCGCTTTGGCCAATGTTCTGACGAAGTTTTACGCCGGCGATAAAGGAAGTTATGGCAAATTGTTTGAAAACTCTTTCTTAAAGCCCACTGTGCGATATGAGCTTAAACATGGTGATATGTTGACATTGGGTGATGTGAAATGTCAGTATTTGGTTAGTCTGGACATGGAAGAGGAAGATGAAGATGAAACTGGTTCAGAAACAGGATCAGAGTCCATGCTTCAAGATGTAAACACTGAAGAGGAACTGGATCTTGATAAGCCAATTGTTACTGAGGATGATAGCACTTCAAAGAAGATTAATCAAAAGGATGATGTTTGGAGGGATGAGTTATTGCAGCCAACAGAAGATCACCAAACAGCAAAACCAACCAAGGATGATGAAGAGGCATACGCTGCAGACACAGATTCAGACACAGATGAGGAGAGGCCACTTGCAGTAGCAGCAATGGCGACTGTACTGTACAGCTCTGAAGATGAACAAGAGACACCTAGAAGGCAACAGGTTACCACTAGCGTTCCAAGTAAAGGAAACAATAGCATGGAGGGACAGACTCTAGCATTTGGACTTGGAAGCCCACGTAATGTTTTTAAGAGCAGAGATTCCACTGACTCTTCTGAATCTCACCCAGGACAAACAGCAAGCGTTCCACCAACTTTAATGCTTAGCACTGAATCTGATTCACAGTCAGATGGGAAACATGATATGTCATCTGATCAGGATAACAAACCAAGCTCATTCAAGCACCCTGGAGCTAGGGGCTCAGGAACCCAACCTCCCTGCGATCCAACACTTTTGTATGGCTCTGAATCTGATGACGGAAGCCCCATAAAAAAACCCAAGTACCCAGAAGCAAGGGGTTCTGACAAAGGCCCCTCTTGTGAGCCAACACTTCTTTATGGTTCCGAATCTGATGATGGGACTCCCAAGAAGAAACCAAGACAGCCAGAAGCTTCAAATGCACCAACTTTGTTATATGAATCTGATCCTGAGGAAGGAACTGGTGCAGCACCCAATGAATCAGATGCAAGAGGAGATGGTCAGCATGATCAACGTGCCACTGATGATCAAACCCTGTTGTATAGTGAGGCATCTGAAGGAAAAACACCAAGTCTTCCTGCTATAACCGCGGAAGATGTGGGGGATGATTCTCCAGAAGAATCTGCAGAGAAGAGACCAGACATACAAGATATGCAAGAGGCTACAGTTGCAGTGAAGGACAGTGATGCAACACTGCCATATGCTGAAGCTGAAATGAGTTCAACTGATGATGAAGAAGATTCAGAGGCAGTTGCAGATGATAAAAAGATTAATCTTGATGAAACTCCAGCGGATGTGGAGCCCACCTTGGCTTACACTGTGGACTCAAGAAAAGAGGATTCAACAGATGATGAACAAGACAGTGTGGATGCCGATGATTACGGAGCGGATATTGCCACTCAAGCCTATGCTGCTGATAATGTTGATAGTGACTCTGAAGCAGAAAGTGAACCTATTCCACTTGGTAGTGATCACGCAGCACCCAAGAGTGATGCAAACCAACCAGCTAAGCTTTCTGACTTGGAGGCAACACAGGCATATTGTGTAGAAGAGGAGGACAACTCTGACAGTTCAGATTCTCAACCACTGCCTATTGGTACTGCTGCAACTTCATCTCATGACAACATTTTAGCAACAATGGCATATGGATTAGAGGCGACTCAAGCTCACGATGTTTCTGAGAAGGATGGTGATAGTGATAAAGGTGGAGAAAAGGATGAGCAAGACAACAAACCAACTCTCGCTTATGACTTACTGGCGACTCAGGCATACGGCGCTGGTGATGATGACGAGGAAGAGGATACGAGAGAAAGCCATCAAGAGACAGTTCAAGAGCCATCAGCTTATGCCGGGGCTTTAGTTAACAAAAGTGAGGCTGACCAACCTACCATTGCGTATGGACTGGAGGCAACTCAAGCATATGGCGCCAATGATGAAACCGATGATGAGGAGACTGATAATGAAGACAGAAGCAGCACAGGTGGGGACCAGGGCAGAGGTCATGATGCAAATGCAGCAACACTTGCATATGGTTTAGACCCCACTCAGCCTTATGGAGGTGATGATGATGATGATAATGATGACATTAATGACGATAATAAAGATGATAAAGACAGTGGTCATCCAAGACAGGATTTCCTGGCCACATTGCCTTATGGGTTGGAGGAAACACAGGCTTACGATGGGGATAACAATGATGCAGATTCAGCTCAGAATAGCATGGTTGAAGCTACTCAAGCCTATGGGATTGAAGAGCCGTCTGAAGCCGAATTACAAGCACAGCAAAGTGAAAGAGCAACAAAGACCACTAACAAAAAGAGAGTTGCTTTTGCTAGCTCTTCTACAGAGGTGACTGAGGCAGATGAAAGTGAAGTTGACGTGCCAGTGATTGATAAAGGTGACCAAAGCAAACCTTCTACCAGCACTGCTGCTGATGTAGAGGACTACCTGCCAGACAGTGAAGATTTGATACCTCCACCACGATCACGTTCTAAGAGGGGGAGAAAAAAGCCGGTCATTGAAGAGTCCCAGGAAGAAACTAGTCAACAGTCTGACAAGTTGGAAGAACCTATGGATCAATCAGAATCTGTGGTAAAAATTTCCAGTGCTGGTATAACAGAACAGATGGATGGGACAAGTGAAGCACCAGAAGGAAAAGAAAAAATGCAGCTGACTAAACCGGCAACAAGAAGAGGAAGAAAGGGAGCAATGAGGGTGACGATTGAACCTGAAGAACCACAGGAGGAGGAGGAAAGAGAAACATCAACAAGGAAAGGACGGAGAGGTGTAATGACGGCACTGACAAATGAGCCTGAAGATGAAGAGGAAAATGTTGCAAAGGAAACTTCAGCTGCGGGTAGAAAGAGGGGAAGACAAACAGCAAAAACAACAAGTGTTGCAGCAGAAGAGGAGAAAGAGGCACCTGTAACCAAATCAAGAAGAGGACGGAGAGGAAAGGCAGTACAAGCTGAAGCCACTTCAGTGTCAGAAACACCACTCAAGACACCCACAGACAGTGCAGTAGTACAAGAGGTAACTGATTCTGAAACTTCTGCAACTGTGGTTGTAGAATCTACCCTTAATGTTCGCAGAGGAGGAAGAGGAAGGGGAAGAAAGGGAGCGGCAGCTGAAGAAACAGCTCAGACAGCTCAAGATGAAAAGGTCCCTGGTACTTCTGTTGAACCTCAGCCAGAATCACACACAGAAAATGTGCCAACAAGAGGGAAAGGAAGAGGGAAGGGAAGAGGAAAAAAAAGTCAGCCATCAGTTAATGAATCAATGACAACAGATTCCCTTGATGCAGAAGTACCTGCTATTTCTGATGAAGTACAGCCAGAGCAAACCCTAGCTACACCTGCCAGAGGGAAAGGGAGAGGAAAAGGCAGAGGAAGGAAAACACAACCTAAGTTAACTTTTGATCCTGAATTAGACGCTTCTACAAGTTCTTCTCCACACTTGGCTATGTTTTACACGGGACTGATTCCAAATGGATCCTGTTCGAAAATCAGACTGGATCTTAAGGCCTTCTGTTTACACAGGACCATTTTGGAACCCGTCCCAAATGGATTCAAAACTGGACCTGCTGTTTTGCAGGCAGCAGAAGAAACATCCCAGCCAGAATCAAATTCAGGTTCCAGGGAAAGCTCTCAAACAAGAAAGGGGCGGGGCAGAGGAAAAGTATCAAGGGAAACCACAGAGCAAAATTCTGACATTACTGTCACCATGTCAGAAAATACAGAACTTAGTGAGAGCATTGGAGACTCAGAGGAAAGTACAACTGCAGGAAGTAGCAAAGGGAGTCGCAGAGGAAGGCAAAGAAAAGATGCAGTGGAGGAATCAGAAACAATGGTGGTGACAGGTCTTGGAGGTCAACTGGTGGATAACATTCATAACTGTACACATCTGGTTACAGATAAGGTACGACGCACTGTCAAGTTCTTATGTGGGCTGGCCGGTGGACAAATTATTGTTTTGCCTTCGTGGCTGGATGCTTGCAAAAAGGCCAAGAGTTTTGTTGACATAATTCAAAGTGCTAAAGGAGAGTTTTTGTCCAGTATGCCGAGAAGCAAAGATGACAGAGTTTTTGTAGTCTCTTGTGAAGAGGACAGAAGTGTTTGTAAGAAGCCACTGGATGCTGGGATCCCTGTGGTTAGTGCTGAAGTACTTCTCACAGGAGTGCTGCGGCAGGAGCTTAACCTTGAGGAACATAAATTATTTGCAGAGGAAATGTCAGATGCCTCACAAGATACAAACAGTGCCTCAAGTGGACAAAGCAAAAGAAGAAGAGAAGCATCAGAGGTGGGTGCGTCGTCATCTTCCACGGCAGAAACAAAAAGGACTGGGTCCAAAAGAAGGAAGAGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q767L8	Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa OX=9823 GN=MDC1 PE=3 SV=1
Q5TM68	Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta OX=9544 GN=MDC1 PE=3 SV=1
Q14676	Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens OX=9606 GN=MDC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001384 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00498 all species →	FHA	FHA domain	Family	Interproscan
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR051579 all species →	Family	DNA Damage Response and Transcriptional Regulator	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23196 all species →	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20780	MDC1; mediator of DNA damage checkpoint protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.