Detailed information of evm.model.Ap3.1900 in Astrangia poculata

Genomic Location: Ap3:20573374...20586662
NR annotation: XP_020609053.1, fibroblast growth factor receptor 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P13590Neural cell adhesion molecule 1 OS=Gallus gallus OX=9031 GN=NCAM1 PE=1 SV=3
P13591Neural cell adhesion molecule 1 OS=Homo sapiens OX=9606 GN=NCAM1 PE=1 SV=3
O60602Toll-like receptor 5 OS=Homo sapiens OX=9606 GN=TLR5 PE=1 SV=5
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000113 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF00047
all species →		igImmunoglobulin domainDomainInterproscan
PF13895
all species →		Ig_2Immunoglobulin domainDomainInterproscan
PF13676
all species →		TIR_2TIR domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR035897
all species →		Homologous_superfamilyToll/interleukin-1 receptor homology (TIR) domain superfamilyInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR013151
all species →		DomainImmunoglobulinInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR015621
all species →		FamilyInterleukin-1 receptor familyInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR000157
all species →		DomainToll/interleukin-1 receptor homology (TIR) domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11890
all species →		INTERLEUKIN-1 RECEPTOR FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007165
all species →		Biological Processsignal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05171IL1RL1, ST2; interleukin 1 receptor-like 1-Cytokine receptorsko04050deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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